guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit cd27002ab4347a0173c7ed690ddc21095be28ce9
Author: Laurent Gatto <[email protected]>
AuthorDate: Mon Mar 2 08:52:48 2026 +0100
gnu: Add r-scpdata.
* gnu/packages/bioconductor.scm (r-scpdata): New variable.
Change-Id: Ia1dbede5d8b29bc771b16e8efa08880d8a5c2ab6
---
gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2ec65b8465..9378d6ecc3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3365,6 +3365,35 @@ is Illumina hiseq Level 3 RSEM normalized expression
data from 2015-11-01
snapshot.")
(license license:gpl2)))
+(define-public r-scpdata
+ (package
+ (name "r-scpdata")
+ (version "1.18.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scpdata" version
+ 'experiment))
+ (sha256
+ (base32 "049qrzjj26s41q0nl3q85bz91lwpd5j3i1c4gxwbavm0izhhk3ym"))))
+ (properties `((upstream-name . "scpdata")))
+ (build-system r-build-system)
+ (arguments
+ ;; Tests require internet access via r-experimenthub
+ (list #:tests? #f))
+ (propagated-inputs (list r-annotationhub r-experimenthub r-qfeatures
+ r-s4vectors r-singlecellexperiment))
+ (native-inputs (list r-knitr r-testthat))
+ (home-page "https://bioconductor.org/packages/scpdata";)
+ (synopsis "Single-cell proteomics data package")
+ (description
+ "The package disseminates mass spectrometry (MS)-based single-cell
proteomics
+(SCP) datasets. The data were collected from published work and formatted
+using the `scp` data structure. The data sets contain quantitative
+information at spectrum, peptide and/or protein level for single cells or
+minute sample amounts.")
+ (license license:gpl2)))
+
(define-public r-sesamedata
(package
(name "r-sesamedata")
