guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit 5200e0c81cbd5ff0cb63ce0c922bf65fb99c8eeb
Author: Laurent Gatto <[email protected]>
AuthorDate: Mon Mar 2 08:49:32 2026 +0100
gnu: Add r-msdatahub.
* gnu/packages/bioconductor.scm (r-msdatahub): New variable.
Change-Id: I63977e3c950b122c014108683e84aefa51972064
---
gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 434437dc7c..773f871521 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11868,6 +11868,35 @@ package thus provides an alternative MS data
representation for very large or
remote MS data sets.")
(license license:artistic2.0)))
+(define-public r-msdatahub
+ (package
+ (name "r-msdatahub")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MsDataHub" version))
+ (sha256
+ (base32 "09rfj583b1vz3p328pnlrzj7mxg6804ia1q84p9y5pvzcb0z17fv"))))
+ (properties `((upstream-name . "MsDataHub")))
+ (build-system r-build-system)
+ (arguments
+ (list
+ #:phases '(modify-phases %standard-phases
+ (add-after 'unpack 'set-HOME
+ (lambda _
+ (setenv "HOME" "/tmp"))))))
+ (propagated-inputs (list r-experimenthub))
+ (native-inputs (list r-knitr r-testthat))
+ (home-page "https://rformassspectrometry.github.io/MsDataHub";)
+ (synopsis "Mass spectrometry data on ExperimentHub")
+ (description
+ "The @code{MsDataHub} package uses the @code{ExperimentHub}
+infrastructure to distribute raw mass spectrometry data files, peptide
+spectrum matches or quantitative data from proteomics and metabolomics
+experiments.")
+ (license license:artistic2.0)))
+
(define-public r-msexperiment
(package
(name "r-msexperiment")
