guix_mirror_bot pushed a change to branch r-team
in repository guix.
discard 7b822ff0b7 gnu: r-phyloseq: Update to 1.54.1.
discard 15a804fe5f gnu: r-gsva: Update to 2.4.6.
discard 65d96a5745 gnu: r-mlr3pipelines: Update to 0.11.0.
discard 19ffcafc5a gnu: r-mlrmbo: Update to 1.1.6.
discard 86cb802b86 gnu: r-lhs: Update to 1.2.1.
discard 183372123a gnu: r-osqp: Update to 1.0.0.
discard 75deb0f040 gnu: r-clarabel: Update to 0.11.2.
discard 8d9ea3db16 gnu: r-blackbox: Update to 1.1.54.
discard 87bc4079aa gnu: r-geosphere: Update to 1.6-5.
discard dc3ab2030b gnu: r-mlr3cluster: Update to 0.3.0.
discard f0f9864f07 gnu: Add r-smotefamily.
discard 99ebe88ab3 gnu: Add r-vtreat.
discard 6ec94b3d95 gnu: Add r-wrapr.
discard cfa4717695 gnu: Add r-doe-base.
discard db973a3e43 gnu: Add r-conf-design.
discard 387d90588d gnu: Add r-numbers.
discard 718d926183 gnu: Add r-scpdata.
discard 124cc4e857 gnu: Add r-scp.
discard 13d841c515 gnu: Add r-msdatahub.
discard d5a2fd0086 gnu: r-mlr3cluster: Disable one test.
discard 47c7302ad7 gnu: r-aster: Disable vignettes.
discard d920f57cc8 gnu: r-antiword: Update to 1.3.5.
discard a9d428a2df gnu: r-bbotk: Update to 1.9.0.
discard c079bc87fb gnu: r-mlr3: Update to 1.5.0.
discard e5253817c9 gnu: r-mlr3misc: Update to 0.21.0.
discard 5a19398d8b gnu: r-mlr3mbo: Update to 1.0.0.
discard bc3dbedee3 gnu: r-tidypredict: Update to 1.1.0.
discard fa230eb7d1 gnu: r-emojifont: Update to 0.6.0.
discard 7caad8ef9a gnu: r-tweedie: Update to 3.0.17.
discard fad2280b04 gnu: r-magick: Update to 2.9.1.
discard 1f1cf3e532 gnu: r-xts: Update to 0.14.2.
discard 25a2369b3d gnu: r-rmumps: Update to 5.2.1-37.
discard 283aba5db7 gnu: r-rcppnumerical: Update to 0.7-0.
discard 0aaa366739 gnu: r-openssl: Update to 2.3.5.
discard 571b15847f gnu: r-countrycode: Update to 1.7.0.
discard 2b0206be5d gnu: r-scran: Update to 1.38.1.
discard 4bb1bd6dc4 gnu: r-scdblfinder: Update to 1.24.10.
discard 35453bdcee gnu: r-mutationalpatterns: Update to 3.20.1.
discard 2200991948 gnu: r-gsva: Update to 2.4.5.
discard 20f779e4d9 gnu: r-systempiperdata: Update to 2.14.5.
discard f47aaac36c gnu: r-illuminahumanmethylationepicv2manifest: Update to
1.0.1.
discard 9ab2a9a70b gnu: r-illuminahumanmethylationepicv2anno-20a1-hg38: Update
to 1.0.1.
discard 959c5f9c28 gnu: r-survcomp: Update to 1.60.1.
discard c7ed29d093 gnu: apache-arrow: Update to 23.0.1.
discard c768402ca8 gnu: r-eyelinker: Update to 0.2.2.
discard 7e49de6e05 gnu: r-mlr3viz: Update to 0.11.0.
discard 77bfd2201a gnu: r-seqminer: Update to 9.9.
discard bc3a09edb6 gnu: r-survminer: Update to 0.5.2.
discard 5cbf82ad8f gnu: r-consrank: Update to 3.0.
discard 9b6b7c32ae gnu: r-univoutl: Update to 0.5.0.
discard 30d0ae776e gnu: r-actcd: Update to 1.4-0.
discard b945312587 gnu: r-graphlayouts: Update to 1.2.3.
discard cf55f64684 gnu: r-xtable: Update to 1.8-8.
discard dc267856c0 gnu: r-arrow: Update to 23.0.1.1.
discard 0eb25ef519 gnu: r-sf: Update to 1.1-0.
discard c7e934b059 gnu: r-testit: Update to 0.16.
discard a22796f2aa gnu: r-tweedie: Update to 3.0.16.
discard 94f3d8ec00 gnu: r-survey: Update to 4.5.
discard 4db9f72539 gnu: r-ggpubr: Update to 0.6.3.
discard c3156b7c75 gnu: r-later: Update to 1.4.7.
discard 72f0641449 gnu: r-simdesign: Update to 2.24.
discard 446e795c29 gnu: r-raceid: Update to 0.4.0.
discard 2eb0971aa4 gnu: r-scatterplot3d: Update to 0.3-45.
discard 48c108c356 gnu: r-ips: Update to 0.0.13.
discard f3413f2c92 gnu: r-useful: Update to 1.2.7.
discard 9d210f8a99 gnu: r-pls: Update to 2.9-0.
discard 287533c47a gnu: r-caliberrfimpute: Update to 1.0-8.
discard 8015243660 gnu: r-snowflakeauth: Update to 0.2.2.
discard 6500a91491 gnu: r-sn: Update to 2.1.3.
discard 46a0721788 gnu: r-ggalluvial: Update to 0.12.6.
discard 67dda70778 gnu: r-ggiraph: Update to 0.9.6.
discard 2cce186d2f gnu: r-ggrepel: Update to 0.9.7.
discard 3fa86d9fdd gnu: r-vcfr: Update to 1.16.0.
discard 74fb6af81e gnu: r-dbi: Update to 1.3.0.
discard 49780cbc65 gnu: r-smoof: Update to 1.7.0.
discard e540bf9cae gnu: r-argparser: Update to 0.7.3.
discard b404aeee0f gnu: python-pytorch-for-r-torch: Use python-build-system.
discard 64022f5b05 gnu: r-iotools: Update to 0.4-0.
discard b14605d548 gnu: r-fauxpas: Update to 0.6.0.
discard 9913e3624c gnu: r-paws-common: Update to 0.8.9.
discard ea6e0651e6 gnu: r-mlr3: Update to 1.4.0.
discard b5e6a94e0a gnu: r-mlr3misc: Update to 0.20.0.
discard 0b95ecee04 gnu: r-lobstr: Update to 1.2.0.
discard 15b65c1969 gnu: r-rselenium: Update to 1.7.10.
discard b4acfa5d75 gnu: r-ada: Update to 2.0-5.1.
discard c09c2d30bb gnu: r-clue: Update to 0.3-67.
discard a52895f028 gnu: r-gridtext: Update to 0.1.6.
discard f321a4a010 gnu: r-mlbench: Update to 2.1-7.
discard ce741c78e8 gnu: r-rms: Update to 8.1-1.
discard 9b938d2701 gnu: r-future-apply: Update to 1.20.2.
discard 81abe0bfae gnu: r-huge: Update to 1.4.
discard 6f0ba6ad9c gnu: r-tm: Update to 0.7-18.
discard cf6f4a8d9a gnu: r-fmesher: Update to 0.7.0.
discard 42087e71f1 gnu: r-ncmisc: Update to 1.3.1.
discard 5c85268478 gnu: r-dofuture: Update to 1.2.1.
discard bedfe3f7c6 gnu: r-tseries: Update to 0.10-60.
discard f52940e61c gnu: r-laplacesdemon: Update to 16.1.8.
discard 3d5ede969c gnu: r-relations: Update to 0.6-16.
discard d17158f98a gnu: r-gap: Update to 1.14.
discard a82a086e76 gnu: r-readr: Update to 2.2.0.
discard b927be1b05 gnu: r-fuzzyjoin: Update to 0.1.8.
discard 9341255894 gnu: r-effects: Update to 4.2-5.
discard aa286e0311 gnu: r-ggiraph: Update to 0.9.5.
discard 2fbf6ff843 gnu: r-flare: Update to 1.8.
discard daaa179624 gnu: r-bb: Update to 2026.1.0.
discard a4030da625 gnu: r-ecosolver: Update to 0.6.1.
discard e8604529ae gnu: r-voltron: Replace custom phase with #:skipped-tests.
discard d3302445e5 gnu: r-caretensemble: Replace custom phase with
#:skipped-tests.
discard ce97eaec61 gnu: r-lightgbm: Replace custom phase with #:skipped-tests.
discard 8e2c22c5fe gnu: r-rvenn: Replace custom phase with #:skipped-tests.
discard 431d87a29e gnu: r-mosaic: Replace custom phase with #:skipped-tests.
discard 161e46776a gnu: r-rsconnect: Replace custom phase with #:skipped-tests.
discard d1dd53a09c gnu: r-phangorn: Replace custom phase with #:skipped-tests.
discard 10665b6f35 gnu: r-latex2exp: Replace custom phase with #:skipped-tests.
discard 31bb8f87c1 gnu: r-glmmtmb: Replace custom phase with #:skipped-tests.
discard 198a590818 gnu: r-options: Replace custom phase with #:skipped-tests.
discard f19d4c1757 gnu: r-seqminer: Replace custom phase with #:skipped-tests.
discard 438141c1ab gnu: r-seqminer: Add missing inputs.
discard 98db222137 gnu: r-arrow: Replace custom phase with #:skipped-tests.
discard b38ee98de8 gnu: r-proxyc: Replace custom phase with #:skipped-tests.
discard d5eb82b654 gnu: r-bedr: Replace custom phase with #:skipped-tests.
discard 37bff0c61b gnu: r-data-tree: Replace custom phase with #:skipped-tests.
discard bdd6f13cfc gnu: r-bindr: Replace custom phase with #:skipped-tests.
discard bc421bd1c8 gnu: r-flextable: Replace custom phase with #:skipped-tests.
discard f1c62b304d gnu: r-lintr: Replace custom phase with #:skipped-tests.
discard 43411f866c gnu: r-workflows: Replace custom phase with #:skipped-tests.
discard 2fc960c443 gnu: r-mi: Enable all tests.
discard b8b904eed7 gnu: r-rstpm2: Enable all tests.
discard 2ef8aa1c55 gnu: r-trycatchlog: Replace custom phase with
#:skipped-tests.
discard c819f636a4 gnu: r-bslib: Replace custom phase with #:skipped-tests.
discard 755ba5e523 gnu: r-datawizard: Replace custom phase with
#:skipped-tests.
discard 86e17eafb0 gnu: r-ggdist: Replace custom phase with #:skipped-tests.
discard 8a8608a74d gnu: r-tailor: Replace custom phase with #:skipped-tests.
discard 3a15bd520c gnu: r-vcr: Replace custom phase with #:skipped-tests.
discard 6a43c7a571 gnu: r-readr: Replace custom phase with #:skipped-tests.
discard 4474d8856e gnu: r-gfonts: Replace custom phase with #:skipped-tests.
discard 375b21b410 gnu: r-cutpointr: Replace custom phase with #:skipped-tests.
discard 6b09c70922 gnu: r-httr2: Replace custom phase with #:skipped-tests.
discard 08258ccf87 build-system/r: Add build phase to skip tests.
discard 54e3a800d9 gnu: r-biomart: Update to 2.66.1.
discard efc470adb0 gnu: r-animalcules: Update to 1.26.1.
discard 7ae6b4d6e2 import/cran: Uniquify inputs.
discard dc48a2b79c import/cran: Use sets instead of lset-union.
discard 87e320f3d4 gnu: r-cytoml: Update list of ignored native inputs.
discard 58b56ae5c5 import/cran: Fix import of packages in single quotes.
discard 3c69a2eb56 gnu: r-tsne: Move to (gnu packages cran).
discard 01882b3804 gnu: r-trimcluster: Move to (gnu packages cran).
discard 8d2bb9c01a gnu: r-tmvnsim: Move to (gnu packages cran).
discard f438e5cab1 gnu: r-tidyselect: Move to (gnu packages cran).
discard 59845ab3cb gnu: r-tidyr: Move to (gnu packages cran).
discard 4a5976b2c0 gnu: r-tibble: Move to (gnu packages cran).
discard faebd576e0 gnu: r-testthat: Move to (gnu packages cran).
discard 48801110e5 gnu: r-tclust: Move to (gnu packages cran).
discard c5a70e871e gnu: r-synchronicity: Move to (gnu packages cran).
discard ac0865e5db gnu: r-statmod: Move to (gnu packages cran).
discard 25e05d6f99 gnu: r-sparsem: Move to (gnu packages cran).
discard 1f25e8bd77 gnu: r-sourcetools: Move to (gnu packages cran).
discard 6fa9bfc4a0 gnu: r-snow: Move to (gnu packages cran).
discard d8375bebdd gnu: r-sn: Move to (gnu packages cran).
discard 9c55dfe62f gnu: r-simr: Move to (gnu packages cran).
discard 8f6bc9cb7c gnu: r-sfsmisc: Move to (gnu packages cran).
discard d79f9fd18e gnu: r-segmented: Move to (gnu packages cran).
discard 3f165d5fa0 gnu: r-vpc: Move to (gnu packages cran).
discard b5813565d0 gnu: r-rversions: Move to (gnu packages cran).
discard 3d2542cd50 gnu: r-runit: Move to (gnu packages cran).
discard 1140884195 gnu: r-rtsne: Move to (gnu packages cran).
discard 63ac4740de gnu: r-rstudioapi: Move to (gnu packages cran).
discard 2987030bd6 gnu: r-rsqlite: Move to (gnu packages cran).
discard f5fb1965c6 gnu: r-rrcov: Move to (gnu packages cran).
discard 916d374525 gnu: r-rprojroot: Move to (gnu packages cran).
discard 8f73f134a1 gnu: r-roxygen2: Move to (gnu packages cran).
discard 09bc26a3cc gnu: r-rocr: Move to (gnu packages cran).
discard 1b103be682 gnu: r-robustbase: Move to (gnu packages cran).
discard 13f093624c gnu: r-robust: Move to (gnu packages cran).
discard fa191c007f gnu: r-rngtools: Move to (gnu packages cran).
discard 73e324ef67 gnu: r-rmarkdown: Move to (gnu packages cran).
discard 1a1bf7db82 gnu: r-rlrsim: Move to (gnu packages cran).
discard f1180a77bd gnu: r-rlang: Move to (gnu packages cran).
discard 0bc34be0cb gnu: r-rematch: Move to (gnu packages cran).
discard e356edec7c gnu: r-registry: Move to (gnu packages cran).
discard e58327c831 gnu: r-reghelper: Move to (gnu packages cran).
discard b7dbf56ba6 gnu: r-readr: Move to (gnu packages cran).
discard 46f1d10528 gnu: r-rcurl: Move to (gnu packages cran).
discard b36e998a9a gnu: r-rcppprogress: Move to (gnu packages cran).
discard ba8e870272 gnu: r-rcppeigen: Move to (gnu packages cran).
discard be1f861e2e gnu: r-rcpparmadillo: Move to (gnu packages cran).
discard bf3eebdd00 gnu: r-r-utils: Move to (gnu packages cran).
discard fae3e4d0bc gnu: r-r-rsp: Move to (gnu packages cran).
discard 9700fa6801 gnu: r-r-methodss3: Move to (gnu packages cran).
discard e529419546 gnu: r-r-oo: Move to (gnu packages cran).
discard af20c5485e gnu: r-r-cache: Move to (gnu packages cran).
discard c7973225d1 gnu: r-rann: Move to (gnu packages cran).
discard 3d16c8e323 gnu: r-ranger: Move to (gnu packages cran).
discard b88085a4af gnu: r-randomforest: Move to (gnu packages cran).
discard ccd60c81c1 gnu: r-rcolorbrewer: Move to (gnu packages cran).
discard cd9fd720f5 gnu: r-ez: Update to 4.5-0.
discard 51c551c0f7 gnu: r-unigd: Update to 0.2.0.
discard b8f362fd62 gnu: r-tweedie: Update to 3.0.14.
discard 2771ac2664 gnu: r-multcompview: Update to 0.1-11.
discard 74c7529288 gnu: r-stable: Update to 1.1.7.
discard 512c57f010 gnu: r-rpostgres: Update to 1.4.10.
discard 01be77e2ee gnu: r-msnid: Update to 1.44.2.
discard fcff4192b4 gnu: r-nebulosa: Update to 1.20.1.
discard 3881ebba19 gnu: r-forecast: Update to 9.0.1.
discard 0817179d34 gnu: r-gstat: Update to 2.1-5.
discard 93d828e634 gnu: r-randomforestsrc: Update to 3.5.1.
discard 865f6b1634 gnu: r-stars: Update to 0.7-1.
discard 0b64740fd9 gnu: r-vdiffr: Update to 1.0.9.
discard f7c3501f04 gnu: r-igraph: Update to 2.2.2.
discard cede3533cd gnu: r-nanoarrow: Update to 0.8.0.
discard c266fd2297 gnu: r-semplot: Update to 1.1.8.
discard d9306baffe gnu: r-semtools: Update to 0.5-8.
discard 894a947f17 gnu: r-fillpattern: Update to 1.0.3.
discard 6fe6fd51e1 gnu: r-xgboost: Update to 3.2.0.1.
discard 86e6226fb8 gnu: r-xml: Update to 3.99-0.22.
discard ededad013a gnu: r-ggvis: Update to 0.4.10.
discard ba417cc2f7 gnu: r-haplo-stats: Update to 1.9.8.2.
discard 683b036731 gnu: r-spdep: Update to 1.4-2.
discard a9a201d216 gnu: r-targets: Update to 1.12.0.
discard 13dba7d7f9 gnu: r-tarchetypes: Update to 0.14.0.
discard daf6ad6e10 gnu: r-flextable: Update to 0.9.11.
discard 0685bfa726 gnu: r-reticulate: Update to 1.45.0.
discard 43fb4a409a gnu: r-later: Update to 1.4.6.
discard 20c1d4df32 gnu: r-simdesign: Update to 2.23.
discard 01becb831a gnu: r-np: Update to 0.60-20.
discard 0ec9e4b952 gnu: r-trust: Update to 0.1-9.
discard 304e38db55 gnu: r-psychotools: Update to 0.7-6.
discard 67e2635b3a gnu: r-lpsolveapi: Update to 5.5.2.0-17.15.
discard bcdfc947f5 gnu: r-sp: Update to 2.2-1.
discard b8cdf739d8 gnu: r-rcppspdlog: Update to 0.0.27.
discard e74fe743a6 gnu: r-httr: Update to 1.4.8.
discard 148904b502 gnu: r-mirai: Update to 2.6.0.
discard 90284f3c4a gnu: r-marginaleffects: Update to 0.32.0.
discard abfe0e504f gnu: r-plotrix: Update to 3.8-14.
discard 81cfe154c9 gnu: r-dbplyr: Update to 2.5.2.
discard 2e501a28fd gnu: r-model4you: Update to 0.9-9.
discard 3a2dc9f534 gnu: r-ggpicrust2: Update to 2.5.10.
discard 73c471a0f9 gnu: r-dunn-test: Update to 1.3.7.
add 72a4871432 gnu: icedove: Update to 140.8.0.
add 75db21a939 gnu: Add gem5.
add 76f145796f gnu: qt-creator: Update to 18.0.2.
add 7358fa9262 gnu: oils: Rename to oils-for-unix.
add 135a7dafa7 gnu: oils-for-unix: Update to 0.37.0.
add eada168e3a gnu: flashrom: Update to 1.7.0.
add 745a005c00 gnu: python-pytooling: Update to 8.12.0.
add 6046e27b93 gnu: emacs-flycheck: Update to 36.0.
add 50f998e04c gnu: emacs-rust-mode: Fix and enable tests.
add 5fc3a79d05 gnu: Add libfccp.
add ae507120da gnu: audmes: Fix native input.
add ec3cc2458a gnu: audmes: Update to 2025.04.05.
add 860f89ef46 gnu: trealla: Update to 2.91.0.
add 5925008664 gnu: Remove python-sphinx-basic-ng.
add 80364f174a gnu: python-euphonic: Refresh input.
add aa7a476549 gnu: sage: Refresh input.
add 19dbcc92e5 gnu: Remove meson-python.
add b0b9fedbe4 gnu: Add sbcl-in-nomine, cl-in-nomine, ecl-in-nomine.
add 6682027c99 gnu: Add back deprecated meson-python.
add 5b3e234af5 gnu: Remove gss.
add 7ab8d91783 gnu: hyprwire: Update to 0.3.0.
add d8e1ec344f gnu: hyprland: Update to 0.54.0.
add 832ce65550 gnu: elinks: Update to 0.19.1.
add c4e95392a3 gnu: elinks: Update indentation.
add e26bc7949a gnu: ascii: Update to 3.31.
add 8bd2cce1f4 teams: Move BonfaceKilz from lisp to guile team.
add f6bbfca83f gnu: Add gubar.
add 16fc49ce9a gnu: boost-mpi: Fix synopsis.
add f2ecc3cd40 gnu: Add boost-mpi-numpy.
add 718b20f0a8 gnu: Add alps.
add 38c5d7beb0 gnu: boost-with-numpy: Fix synopsis
add 72cf11751e gnu: python-blosc: Update to 1.11.4.
add 7900633df3 gnu: Add jhead.
add c087d1d622 doc: Fix typo in home-readymedia-service-type example.
add 7be7319016 gnu: rust-xremap: Add back features argument.
add 1e529196aa gnu: awesome: Fix manual pages generation.
add bfefaabecc gnu: awesome: Separate hypertext documentation.
add bedc36b1f1 gnu: awesome: Refresh package.
add 478d38fc69 gnu: emacs-yeetube: Update to 2.1.12.
add 9a42390493 gnu: python-faiss: Switch to pyproject-build-system.
add bd0fc2f1b1 gnu: jack-capture: Update to 0.9.73-0.a539d44.
add c87031efe8 teams: Add build-tools team.
add e4cc67782e doc: Refresh python documentation.
add 04598b5d06 gnu: remind: Update to 6.02.01.
add 30bd3bda23 gnu: remind: Fix tkremind fontchooser issues.
add 9eb1bf9219 gnu: Add wasm-bindgen-cli.
add 07df03f1ca gnu: sbcl-depot: Update to 1.0.0-2.6b46c7d.
add e51bfd324b gnu: sbcl-dissect: Update to 1.0.0-3.985fe01.
add ba17ac50d4 gnu: sbcl-spinneret: Update to 3.0-7.fa70fca.
add b3a8639c54 gnu: sbcl-named-readtables: Update to aa6dab5.
add f1a2ecf11c gnu: sbcl-serapeum: Update to 0.0.0-13.71f35c9.
add ac9a0bfcd6 gnu: trealla: Update to 2.91.1.
add a7365acd99 gnu: yosys: Use make-flags.
add 2746e07180 services: readymedia: Allow relative paths to media
directories.
add 9efa323d68 gnu: neochat: Add qtpositioning to inputs.
add 6d65f8815d gnu: qpwgraph: Update to 0.9.9.
add b6f7a95dc1 gnu: ruby-asciidoctor-pdf: Update to 2.3.24.
add bc6de88ba3 gnu: Remove python-sparqlkernel.
add 21a7a96cbf gnu: qbittorrent: Update to 5.1.4.
add 478e3f7a8e gnu: freeciv: Update to 3.2.3.
add ca1085a82d gnu: frescobaldi: Update to 4.0.5.
add 079d666bfd gnu: electrum: Update to 4.7.1.
add 54a5eb07f6 gnu: rhythmbox: Update to 3.4.9.
add 5484e3dd5b gnu: Remove duplicate ruby-hoe-3.
add e9ae5b1240 gnu: Remove duplicate ruby-hoe.
add 03e0062b7c gnu: sbcl-cl-posix-mqueue: Fix struct size on linux.
add 0a3e08661a gnu: resample: Fix build.
add a66fce758b gnu: xschem: Update and improve package.
add e5ce22956b gnu: python-klayout: Fix failing test.
add 10ae732c1b gnu: abc-yosyshq: Update to 0.63.
add fcdfedc54e gnu: yosys: Update to 0.63.
add 995e7c800b gnu: make-propeller-binutils: Fix syntax error.
add 129ff35366 gnu: make-propeller-gcc-4: Build with GCC 5.
add ea3532393a gnu: propeller-load: Patch to include header file.
add 742a38e184 gnu: mcy: Update to 0.63.
add 2e1bf10b6c gnu: sby: Update to 0.63.
add 5890d17167 gnu: eqy: Update to 0.63.
add 9c9b800ff6 gnu: opensta: Update to 3.0.0-0.62cd210.
add 15b6925e22 gnu: Remove goffice-0.8.
add 1c3c199c83 gnu: sooperlooper: Improve style.
add f91b1aec63 gnu: sooperlooper: Build with [email protected].
add efe6f14c20 gnu: cimg: Update to 3.7.2.
add 96714f8ec2 gnu: magic: Update to 8.3.613.
add 73f87c741d gnu: xmedcon: Update to 0.26.1.
add 2a2fed74f5 gnu: Fix ack.
new 34bf8f1601 gnu: r-dunn-test: Update to 1.3.7.
new 355e858da1 gnu: r-ggpicrust2: Update to 2.5.10.
new c031de6155 gnu: r-model4you: Update to 0.9-9.
new 2f7df38d4d gnu: r-dbplyr: Update to 2.5.2.
new 596cfc199a gnu: r-plotrix: Update to 3.8-14.
new 28f60c462e gnu: r-marginaleffects: Update to 0.32.0.
new 685a08f823 gnu: r-mirai: Update to 2.6.0.
new e17123a707 gnu: r-httr: Update to 1.4.8.
new ddf5d126b0 gnu: r-rcppspdlog: Update to 0.0.27.
new 9b4ef67a0d gnu: r-sp: Update to 2.2-1.
new 85b455c2d4 gnu: r-lpsolveapi: Update to 5.5.2.0-17.15.
new 247e8bd1a8 gnu: r-psychotools: Update to 0.7-6.
new e8ff01e691 gnu: r-trust: Update to 0.1-9.
new 25394f3ae5 gnu: r-np: Update to 0.60-20.
new 38a184ebff gnu: r-simdesign: Update to 2.23.
new ab43f413f1 gnu: r-later: Update to 1.4.6.
new 0f1784ea4b gnu: r-reticulate: Update to 1.45.0.
new 6e4845e342 gnu: r-flextable: Update to 0.9.11.
new 0ac9f8f88f gnu: r-tarchetypes: Update to 0.14.0.
new 7bf35f21fd gnu: r-targets: Update to 1.12.0.
new 8644a9abe7 gnu: r-spdep: Update to 1.4-2.
new 1d0e0f60d3 gnu: r-haplo-stats: Update to 1.9.8.2.
new 72624a26a5 gnu: r-ggvis: Update to 0.4.10.
new 56baa98fca gnu: r-xml: Update to 3.99-0.22.
new e69ebcb32e gnu: r-xgboost: Update to 3.2.0.1.
new bb620e8301 gnu: r-fillpattern: Update to 1.0.3.
new 32cc58e9d9 gnu: r-semtools: Update to 0.5-8.
new 8cfc4d0627 gnu: r-semplot: Update to 1.1.8.
new f243b28805 gnu: r-nanoarrow: Update to 0.8.0.
new ebb758e3fc gnu: r-igraph: Update to 2.2.2.
new e727925259 gnu: r-vdiffr: Update to 1.0.9.
new 4e059f22bd gnu: r-stars: Update to 0.7-1.
new 6d89dad00b gnu: r-randomforestsrc: Update to 3.5.1.
new 7f4b06d668 gnu: r-gstat: Update to 2.1-5.
new 0779c31a48 gnu: r-forecast: Update to 9.0.1.
new 85511754a1 gnu: r-nebulosa: Update to 1.20.1.
new e9b646729b gnu: r-msnid: Update to 1.44.2.
new 8cc28c348a gnu: r-rpostgres: Update to 1.4.10.
new a4a650d918 gnu: r-stable: Update to 1.1.7.
new a3f351c446 gnu: r-multcompview: Update to 0.1-11.
new 507ae2080e gnu: r-tweedie: Update to 3.0.14.
new 724dac21fe gnu: r-unigd: Update to 0.2.0.
new 632e76b03c gnu: r-ez: Update to 4.5-0.
new c20fbe2ecc gnu: r-rcolorbrewer: Move to (gnu packages cran).
new 855145a1ed gnu: r-randomforest: Move to (gnu packages cran).
new 59017d3d78 gnu: r-ranger: Move to (gnu packages cran).
new ca42bd95fb gnu: r-rann: Move to (gnu packages cran).
new 5b86492b5b gnu: r-r-cache: Move to (gnu packages cran).
new ea01592916 gnu: r-r-oo: Move to (gnu packages cran).
new 4fa6239f33 gnu: r-r-methodss3: Move to (gnu packages cran).
new 45d4fb9bb7 gnu: r-r-rsp: Move to (gnu packages cran).
new 17cca82a61 gnu: r-r-utils: Move to (gnu packages cran).
new 5134880282 gnu: r-rcpparmadillo: Move to (gnu packages cran).
new 63b14f33ec gnu: r-rcppeigen: Move to (gnu packages cran).
new d4e1229d4f gnu: r-rcppprogress: Move to (gnu packages cran).
new c7a4ab27a5 gnu: r-rcurl: Move to (gnu packages cran).
new 07c39e4704 gnu: r-readr: Move to (gnu packages cran).
new 1c0c88902d gnu: r-reghelper: Move to (gnu packages cran).
new 3917542bbb gnu: r-registry: Move to (gnu packages cran).
new 24d124acc4 gnu: r-rematch: Move to (gnu packages cran).
new bf5a395106 gnu: r-rlang: Move to (gnu packages cran).
new 017c885f56 gnu: r-rlrsim: Move to (gnu packages cran).
new 93862c686e gnu: r-rmarkdown: Move to (gnu packages cran).
new 5fd5272878 gnu: r-rngtools: Move to (gnu packages cran).
new 8877ee447d gnu: r-robust: Move to (gnu packages cran).
new 1397725bc8 gnu: r-robustbase: Move to (gnu packages cran).
new 658ffed3ff gnu: r-rocr: Move to (gnu packages cran).
new a5f4c6a085 gnu: r-roxygen2: Move to (gnu packages cran).
new 2132b13cd8 gnu: r-rprojroot: Move to (gnu packages cran).
new ff480030af gnu: r-rrcov: Move to (gnu packages cran).
new a9104f3d65 gnu: r-rsqlite: Move to (gnu packages cran).
new 7eadbb63ef gnu: r-rstudioapi: Move to (gnu packages cran).
new 8092c2d2be gnu: r-rtsne: Move to (gnu packages cran).
new 5e72156efe gnu: r-runit: Move to (gnu packages cran).
new b8322a54e0 gnu: r-rversions: Move to (gnu packages cran).
new 5d196b264d gnu: r-vpc: Move to (gnu packages cran).
new 4bc7c81c58 gnu: r-segmented: Move to (gnu packages cran).
new fab7231be9 gnu: r-sfsmisc: Move to (gnu packages cran).
new 52ac0b243e gnu: r-simr: Move to (gnu packages cran).
new 7e99fb5a5b gnu: r-sn: Move to (gnu packages cran).
new 8ba6b15699 gnu: r-snow: Move to (gnu packages cran).
new 79644741b2 gnu: r-sourcetools: Move to (gnu packages cran).
new 359bd9fe77 gnu: r-sparsem: Move to (gnu packages cran).
new 0a7bedaaad gnu: r-statmod: Move to (gnu packages cran).
new 292c75572b gnu: r-synchronicity: Move to (gnu packages cran).
new ad165c25b3 gnu: r-tclust: Move to (gnu packages cran).
new d9a3b70ba5 gnu: r-testthat: Move to (gnu packages cran).
new dcf69ccc16 gnu: r-tibble: Move to (gnu packages cran).
new b1f3d02b9a gnu: r-tidyr: Move to (gnu packages cran).
new c90652d92b gnu: r-tidyselect: Move to (gnu packages cran).
new 48c7db1c76 gnu: r-tmvnsim: Move to (gnu packages cran).
new d30aa0acbf gnu: r-trimcluster: Move to (gnu packages cran).
new fd57fb8471 gnu: r-tsne: Move to (gnu packages cran).
new 20217c41e2 import/cran: Fix import of packages in single quotes.
new 0e70d64dac gnu: r-cytoml: Update list of ignored native inputs.
new 202d8b5050 import/cran: Use sets instead of lset-union.
new 68b20f78fd import/cran: Uniquify inputs.
new 15a5941da4 gnu: r-animalcules: Update to 1.26.1.
new 6d0bf2f334 gnu: r-biomart: Update to 2.66.1.
new 4528901c98 build-system/r: Add build phase to skip tests.
new 84df1214f7 gnu: r-httr2: Replace custom phase with #:skipped-tests.
new 6652e938a8 gnu: r-cutpointr: Replace custom phase with #:skipped-tests.
new 9b4c08f5a6 gnu: r-gfonts: Replace custom phase with #:skipped-tests.
new 4615a9ee07 gnu: r-readr: Replace custom phase with #:skipped-tests.
new a13518331c gnu: r-vcr: Replace custom phase with #:skipped-tests.
new b8cc61f754 gnu: r-tailor: Replace custom phase with #:skipped-tests.
new 8f4326326a gnu: r-ggdist: Replace custom phase with #:skipped-tests.
new a376ada138 gnu: r-datawizard: Replace custom phase with
#:skipped-tests.
new 5229884e16 gnu: r-bslib: Replace custom phase with #:skipped-tests.
new 990846339d gnu: r-trycatchlog: Replace custom phase with
#:skipped-tests.
new 15728dc382 gnu: r-rstpm2: Enable all tests.
new dca8e93732 gnu: r-mi: Enable all tests.
new f77aace3e2 gnu: r-workflows: Replace custom phase with #:skipped-tests.
new 0aa51c5d10 gnu: r-lintr: Replace custom phase with #:skipped-tests.
new 32d28ae44c gnu: r-flextable: Replace custom phase with #:skipped-tests.
new 33ffd2acb6 gnu: r-bindr: Replace custom phase with #:skipped-tests.
new 90bf37f8f5 gnu: r-data-tree: Replace custom phase with #:skipped-tests.
new d4ddd17d17 gnu: r-bedr: Replace custom phase with #:skipped-tests.
new 3ec7f54853 gnu: r-proxyc: Replace custom phase with #:skipped-tests.
new cb4855423e gnu: r-arrow: Replace custom phase with #:skipped-tests.
new f03251a733 gnu: r-seqminer: Add missing inputs.
new 48574b8c50 gnu: r-seqminer: Replace custom phase with #:skipped-tests.
new a718621740 gnu: r-options: Replace custom phase with #:skipped-tests.
new 71466c0178 gnu: r-glmmtmb: Replace custom phase with #:skipped-tests.
new 78272ae23f gnu: r-latex2exp: Replace custom phase with #:skipped-tests.
new 2cd754011a gnu: r-phangorn: Replace custom phase with #:skipped-tests.
new ae2ea1283e gnu: r-rsconnect: Replace custom phase with #:skipped-tests.
new 973e2df58c gnu: r-mosaic: Replace custom phase with #:skipped-tests.
new a16075b95f gnu: r-rvenn: Replace custom phase with #:skipped-tests.
new ad56cdb019 gnu: r-lightgbm: Replace custom phase with #:skipped-tests.
new 62d126f757 gnu: r-caretensemble: Replace custom phase with
#:skipped-tests.
new 6843074d67 gnu: r-voltron: Replace custom phase with #:skipped-tests.
new 232d2f28f2 gnu: r-ecosolver: Update to 0.6.1.
new 68e3210fd6 gnu: r-bb: Update to 2026.1.0.
new 9613ab0ab2 gnu: r-flare: Update to 1.8.
new a6a88c9bf5 gnu: r-ggiraph: Update to 0.9.5.
new beca05e695 gnu: r-effects: Update to 4.2-5.
new 52a7b86e09 gnu: r-fuzzyjoin: Update to 0.1.8.
new a4000a805c gnu: r-readr: Update to 2.2.0.
new acd88b79ea gnu: r-gap: Update to 1.14.
new e9c9ed6534 gnu: r-relations: Update to 0.6-16.
new 53e5dce11d gnu: r-laplacesdemon: Update to 16.1.8.
new 334ee2f6fc gnu: r-tseries: Update to 0.10-60.
new 5035ba35c6 gnu: r-dofuture: Update to 1.2.1.
new 0643c9ff5e gnu: r-ncmisc: Update to 1.3.1.
new 0308f1abfc gnu: r-fmesher: Update to 0.7.0.
new 3cae9e8593 gnu: r-tm: Update to 0.7-18.
new 56a47e84a9 gnu: r-huge: Update to 1.4.
new c55f385dac gnu: r-future-apply: Update to 1.20.2.
new 518cc72c26 gnu: r-rms: Update to 8.1-1.
new c47ce7924f gnu: r-mlbench: Update to 2.1-7.
new e8bc2220d7 gnu: r-gridtext: Update to 0.1.6.
new f789c318a9 gnu: r-clue: Update to 0.3-67.
new 969ee1ba1e gnu: r-ada: Update to 2.0-5.1.
new 7e7a66ad22 gnu: r-rselenium: Update to 1.7.10.
new b01951b280 gnu: r-lobstr: Update to 1.2.0.
new a11ccf2242 gnu: r-mlr3misc: Update to 0.20.0.
new 80503d89c2 gnu: r-mlr3: Update to 1.4.0.
new eb776f869c gnu: r-paws-common: Update to 0.8.9.
new 1900ad7760 gnu: r-fauxpas: Update to 0.6.0.
new cae98e598c gnu: r-iotools: Update to 0.4-0.
new 058b402df7 gnu: python-pytorch-for-r-torch: Use python-build-system.
new 82cc053290 gnu: r-argparser: Update to 0.7.3.
new e1cf298fc2 gnu: r-smoof: Update to 1.7.0.
new 3ff01b3e83 gnu: r-dbi: Update to 1.3.0.
new e70fb48268 gnu: r-vcfr: Update to 1.16.0.
new 5fa4d41f36 gnu: r-ggrepel: Update to 0.9.7.
new 073416c380 gnu: r-ggiraph: Update to 0.9.6.
new ee91a864ba gnu: r-ggalluvial: Update to 0.12.6.
new 830cf8c741 gnu: r-sn: Update to 2.1.3.
new c43b4a607f gnu: r-snowflakeauth: Update to 0.2.2.
new 94780c48f5 gnu: r-caliberrfimpute: Update to 1.0-8.
new cc0f23de27 gnu: r-pls: Update to 2.9-0.
new 30e0187736 gnu: r-useful: Update to 1.2.7.
new 6b9338e35d gnu: r-ips: Update to 0.0.13.
new 09560136f2 gnu: r-scatterplot3d: Update to 0.3-45.
new 0534910822 gnu: r-raceid: Update to 0.4.0.
new b826379572 gnu: r-simdesign: Update to 2.24.
new c415e45d37 gnu: r-later: Update to 1.4.7.
new 49232b8325 gnu: r-ggpubr: Update to 0.6.3.
new 3526479dad gnu: r-survey: Update to 4.5.
new 4356c2a87c gnu: r-tweedie: Update to 3.0.16.
new 7f5014e440 gnu: r-testit: Update to 0.16.
new c9880a1553 gnu: r-sf: Update to 1.1-0.
new 66337d3646 gnu: r-arrow: Update to 23.0.1.1.
new ce1c66907b gnu: r-xtable: Update to 1.8-8.
new aa8cea1243 gnu: r-graphlayouts: Update to 1.2.3.
new 2f8d35e6b4 gnu: r-actcd: Update to 1.4-0.
new 2989066e5e gnu: r-univoutl: Update to 0.5.0.
new b46d70adff gnu: r-consrank: Update to 3.0.
new 071860d212 gnu: r-survminer: Update to 0.5.2.
new 95386e09bc gnu: r-seqminer: Update to 9.9.
new 1166d5951b gnu: r-mlr3viz: Update to 0.11.0.
new bc561057cb gnu: r-eyelinker: Update to 0.2.2.
new 641c05d196 gnu: apache-arrow: Update to 23.0.1.
new 9fda769c1b gnu: r-survcomp: Update to 1.60.1.
new d02719cf2b gnu: r-illuminahumanmethylationepicv2anno-20a1-hg38: Update
to 1.0.1.
new 05edb1949e gnu: r-illuminahumanmethylationepicv2manifest: Update to
1.0.1.
new 56a8f8ae51 gnu: r-systempiperdata: Update to 2.14.5.
new 6671e64135 gnu: r-gsva: Update to 2.4.5.
new 43ca248d52 gnu: r-mutationalpatterns: Update to 3.20.1.
new ff6a2d197b gnu: r-scdblfinder: Update to 1.24.10.
new 88e3173dd1 gnu: r-scran: Update to 1.38.1.
new 587c882fe4 gnu: r-countrycode: Update to 1.7.0.
new 366e10e55e gnu: r-openssl: Update to 2.3.5.
new 0c9ca8fb2a gnu: r-rcppnumerical: Update to 0.7-0.
new 12639725b0 gnu: r-rmumps: Update to 5.2.1-37.
new df7ca08a42 gnu: r-xts: Update to 0.14.2.
new ec9569fc80 gnu: r-magick: Update to 2.9.1.
new 7ad46ea5db gnu: r-tweedie: Update to 3.0.17.
new 74a0bce6d0 gnu: r-emojifont: Update to 0.6.0.
new 459088a077 gnu: r-tidypredict: Update to 1.1.0.
new 13efb2bb08 gnu: r-mlr3mbo: Update to 1.0.0.
new e79d67f6ac gnu: r-mlr3misc: Update to 0.21.0.
new 1bbb4984bc gnu: r-mlr3: Update to 1.5.0.
new f2071c6b57 gnu: r-bbotk: Update to 1.9.0.
new c91c5b3b53 gnu: r-antiword: Update to 1.3.5.
new 9271aea03c gnu: r-aster: Disable vignettes.
new 178b045ed9 gnu: r-mlr3cluster: Disable one test.
new 5200e0c81c gnu: Add r-msdatahub.
new 03a1a4609d gnu: Add r-scp.
new cd27002ab4 gnu: Add r-scpdata.
new 1648eb6879 gnu: Add r-numbers.
new 40616db399 gnu: Add r-conf-design.
new c6e96754bd gnu: Add r-doe-base.
new 00f1c6d204 gnu: Add r-wrapr.
new 060d886e8c gnu: Add r-vtreat.
new 940d1abd9e gnu: Add r-smotefamily.
new 74c9c477c8 gnu: r-mlr3cluster: Update to 0.3.0.
new eed9ee5c0d gnu: r-geosphere: Update to 1.6-5.
new df62744a23 gnu: r-blackbox: Update to 1.1.54.
new 77ee4a0148 gnu: r-clarabel: Update to 0.11.2.
new a176d19c2d gnu: r-osqp: Update to 1.0.0.
new b840dd20cc gnu: r-lhs: Update to 1.2.1.
new 349a81d51e gnu: r-mlrmbo: Update to 1.1.6.
new b59392f595 gnu: r-mlr3pipelines: Update to 0.11.0.
new 90c250786d gnu: r-gsva: Update to 2.4.6.
new 9e44d312ae gnu: r-phyloseq: Update to 1.54.1.
new 55fcd5a1bd gnu: r-cvxr: Disable one test.
new 6fcf604e9c gnu: r-rcppml/devel: Update to 0.5.6-3.2beac65.
new cfa6456fe9 gnu: r-singlet: Update to 0.99.8-1.ef4a374.
This update added new revisions after undoing existing revisions.
That is to say, some revisions that were in the old version of the
branch are not in the new version. This situation occurs
when a user --force pushes a change and generates a repository
containing something like this:
* -- * -- B -- O -- O -- O (7b822ff0b7)
\
N -- N -- N refs/heads/r-team (cfa6456fe9)
You should already have received notification emails for all of the O
revisions, and so the following emails describe only the N revisions
from the common base, B.
Any revisions marked "omit" are not gone; other references still
refer to them. Any revisions marked "discard" are gone forever.
The 241 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
CODEOWNERS | 8 +
doc/contributing.texi | 73 ++-
doc/guix.texi | 9 +-
etc/teams.scm | 18 +-
gnu/local.mk | 3 +-
gnu/packages/audio.scm | 17 +-
gnu/packages/bioinformatics.scm | 10 +-
gnu/packages/bittorrent.scm | 4 +-
gnu/packages/boost.scm | 15 +-
gnu/packages/build-tools.scm | 39 --
gnu/packages/calendar.scm | 5 +-
gnu/packages/computer-architecture.scm | 129 ++++-
gnu/packages/cpp.scm | 32 +-
gnu/packages/cran.scm | 6 +
gnu/packages/electronics.scm | 71 ++-
gnu/packages/emacs-xyz.scm | 56 +-
gnu/packages/embedded.scm | 34 +-
gnu/packages/engineering.scm | 32 +-
gnu/packages/finance.scm | 4 +-
gnu/packages/flashing-tools.scm | 4 +-
gnu/packages/games.scm | 4 +-
gnu/packages/gnome.scm | 32 +-
gnu/packages/gnuzilla.scm | 8 +-
gnu/packages/graph.scm | 96 ++--
gnu/packages/gsasl.scm | 23 -
gnu/packages/image-processing.scm | 4 +-
gnu/packages/image.scm | 32 ++
gnu/packages/jupyter.scm | 44 --
gnu/packages/kde-internet.scm | 1 +
gnu/packages/lisp-xyz.scm | 100 +++-
gnu/packages/machine-learning.scm | 8 +-
gnu/packages/medical.scm | 4 +-
gnu/packages/music.scm | 149 ++---
gnu/packages/patches/gcc-4.6-gnu-inline.patch | 65 ---
.../patches/sbcl-cl-posix-mqueue-mqattr-size.patch | 35 ++
.../patches/tkremind-fix-fontchooser.patch | 31 ++
gnu/packages/physics.scm | 106 +++-
gnu/packages/prolog.scm | 4 +-
gnu/packages/python-compression.scm | 7 +-
gnu/packages/python-xyz.scm | 6 +-
gnu/packages/qt.scm | 12 +-
gnu/packages/ruby-xyz.scm | 69 +--
gnu/packages/rust-apps.scm | 48 ++
gnu/packages/rust-crates.scm | 597 +++++++++++++++++++++
gnu/packages/sagemath.scm | 2 +-
gnu/packages/shells.scm | 28 +-
gnu/packages/shellutils.scm | 4 +-
gnu/packages/sphinx.scm | 19 -
gnu/packages/textutils.scm | 2 +-
gnu/packages/web-browsers.scm | 132 +++--
gnu/packages/wm.scm | 181 ++++---
gnu/services/upnp.scm | 21 +-
52 files changed, 1683 insertions(+), 760 deletions(-)
delete mode 100644 gnu/packages/patches/gcc-4.6-gnu-inline.patch
create mode 100644 gnu/packages/patches/sbcl-cl-posix-mqueue-mqattr-size.patch
create mode 100644 gnu/packages/patches/tkremind-fix-fontchooser.patch
