andreas pushed a commit to branch master
in repository guix.
commit 93f4a0db0675fe847e1fb6bcd740393e0ddb4ceb
Author: David Elsing <david.els...@posteo.net>
AuthorDate: Thu May 1 09:35:13 2025 +0000
gnu: python-h5py: Update to 3.13.0.
* gnu/packages/python-xyz.scm (python-h5py): Update to 3.13.0.
[build-system]: Switch to pyproject-build-system.
[arguments]: Use gexps. Move a modified 'check phase after the 'install
phase.
[native-inputs]: Add python-pytest-mpi, python-setuptools and python-wheel.
Signed-off-by: Andreas Enge <andr...@enge.fr>
---
gnu/packages/python-xyz.scm | 37 +++++++++++++++++++++++++++----------
1 file changed, 27 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 9691c48781..baeeed31d3 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -3872,24 +3872,41 @@ library.")
(define-public python-h5py
(package
(name "python-h5py")
- (version "3.8.0")
+ (version "3.13.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "h5py" version))
(sha256
- (base32 "0pyr6z4h2xqbp49yx2i1401gl6yqh03h771zslwcy0201hpxiskg"))))
- (build-system python-build-system)
+ (base32 "1hq5f5mnkv2138xsq7k7qncf6b7zc0cmm2fhhpd2603j31jy8w0q"))))
+ (build-system pyproject-build-system)
(arguments
- '(#:phases (modify-phases %standard-phases
- (add-after 'unpack 'fix-hdf5-paths
- (lambda* (#:key inputs #:allow-other-keys)
- (setenv "HDF5_DIR"
- (assoc-ref inputs "hdf5")))))))
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'fix-hdf5-paths
+ (lambda _
+ (setenv "HDF5_DIR" #$(this-package-input "hdf5"))))
+ ;; The tests only work after being installed.
+ (delete 'check)
+ (add-after 'install 'check
+ (lambda* (#:key inputs outputs tests? #:allow-other-keys)
+ (when tests?
+ (setenv "H5PY_TEST_CHECK_FILTERS" "1")
+ (with-directory-excursion (site-packages inputs outputs)
+ (invoke "pytest" "-vv"))))))))
(propagated-inputs (list python-six python-numpy))
(inputs (list hdf5))
- (native-inputs (list pkg-config python-cython python-ipython
- python-pkgconfig python-pytest))
+ (native-inputs
+ (list pkg-config
+ python-cython
+ python-ipython
+ python-pkgconfig
+ python-pytest
+ ;; Required to run tests, but the MPI tests are skipped anyway.
+ python-pytest-mpi
+ python-setuptools
+ python-wheel))
(home-page "https://www.h5py.org/";)
(synopsis "Read and write HDF5 files from Python")
(description
