Hi all, I have been facing the following error in my code and it is cryptic to me. I have been scratching my head to understand the error message for weeks but I can’t seem to understand it. Can someone please take a look at show some pointers?
The error message: Failed to execute '*(parse (append (list (gene-info (mapSymbol (list "SPAG9" )))) (list ( gene-go-annotation (list "SPAG9" ) "biological_process cellular_component molecular_function" 3)( gene-pathway-annotation (list "SPAG9" ) "reactome smpdb" "False" "False" )( biogrid-interaction-annotation (list "SPAG9" ) "Proteins" ))) *"TZN6sba" (list "SPAG9" ))' Backtrace: 14 (apply-smob/1 #<catch-closure 7fc7d011a3a0>) 13 (*apply-smob*/1 #<catch-closure 7fc7d011a0a0>) In ice-9/boot-9.scm: 2312:4 12 (save-module-excursion _) In ice-9/eval-string.scm: 38:6 11 (read-and-eval #<input: string 7fc7c661bc40> #:lang_ ) In ice-9/eval.scm: 619:8 10 ( _#(#(#(#(#(#(#(#(#(#(#(#) …) …) …) …) …) …) …) …) …) …)) 626:19 9 (_ #(#(#(#(#(#(#(#(#(#(#(#) …) …) …) …) …) …) …) …) …) …)) 619:8 8 ( _#(#(#(#(#(#(#(#<directory (guile-…>) …) …) …) …) …) …)) In srfi/srfi-1.scm: 640:9 7 (for-each #<procedure 7fc7c66426a0 at ice-9/eval.scm:3…> …) 640:9 6 (for-each #<procedure 7fc7c66425e0 at ice-9/eval.scm:3…> …) In ice-9/eval.scm: 259:9 5 (_ #(#(#<directory (guile-user) 7fc7c7446140> #<v…> …) …)) 298:42 4 ( _#(#(#<directory (guile-user) 7fc7c7446140>) "SPAG9" …)) 155:9 3 (_ #(#(#<directory (guile-user) 7fc7c7446140>) "SPAG9" …)) In rnrs/records/procedural.scm: 218:2 2 (_ "SPAG9") In ice-9/boot-9.scm: 751:25 1 (dispatch-exception 0 r6rs:exception (#<r6rs:record:&r…>)) In unknown file: 0 (*apply-smob*/1 #<catch-closure 7fc7d0122c00> # #<r6rs:re…>) ERROR: In procedure apply-smob/1: In procedure #<r6rs:record:&raise-object-wrapper>: Error while printing exception. ABORT: r6rs:exception Since the project I am working is open-source, the code that is causing this issue can be found here <https://github.com/MOZI-AI/annotation-scheme/blob/master/functions/parser.scm>. I am more than happy to give more info if required — Regards, Abdulrahman Semrie
