Dear gromacs users For fixing PBC problem, I used following command:
gmx_mpi trjconv -f md.trr -s md.tpr -n index.ndx -o new.xtc -pbc nojump But I encountered with: Program gmx trjconv, VERSION 5.1.3 Source code file: /root/gromacs_source/gromacs-5.1.3/src/gromacs/utility/futil.cpp, line: 469 File input/output error: new.xtc For more information and tips for troubleshooting, please check the GROMACS website at http://www.gromacs.org/Documentation/Errors. How to solve that? -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
