Dear Hans,

a few comments:

- Do you need to represent all four substituents around the stereogenic center?

  Because so often, hydrogen if bound to carbon is implicit in the formulae,
  without ambiguity.  And if all four substitutents around the carbon need to
  be shown -- as to introduce / train / test usage of CIP rules -- two
  substituents and the (implicit) carbon in one layer, one substituent above,
  the fourth below the drawing plane could simplify the drawing. Except when
  up to _explain_ Fischer formulae for carbohydrates.

- Re tapered bonds/dashed bonds.

  Do you refer to _dashed bonds_ on one, and a _bold but non-tapered bond_ on
  an other stereogenic center of the same molecule?  If so, this describes the
  two substitutents only in _trans_ relationship to each other, because of
  lack for further evidence about their absolute configuration.  Or to
  describe a mixture of diastereomers, which could be for instance a 1:3 ratio
  of (R,R)- and (S,S)-tartaric acid, or a 1:1 racemate -- vague.

  _Dashed_ sometimes is misused instead of _hashed_ (and opposite to the bold
  wedge).  However _dashed_ (and even more so, _dotted_ lines) typically
  symbolize bonds weaker than a typical covalent single bond, between hydrogen
  bond donors and acceptors.

It is up to you if you use a molecule editor with subsequent export of an
image (an old open access review: https://www.gunda.hu/dprogs/), or construct
the  structures. The later approach is a bit of a niche (as seen for instance
around chemfig for LaTeX e.g., https://doi.org/10.1186/1758-2946-4-24) and less
quick to change and adjust _manually_ if needed (cf. Table I in Brecher's
compilation of guidelines, https://doi.org/10.1351/pac200880020277).

Kind regards,

Norwid
  • Slight alteration ... Hans Bezemer via GNU roff typesetting system discussion
    • Re: Slight al... Norwid Behrnd
      • Re: Sligh... Hans Bezemer via GNU roff typesetting system discussion
        • Re: S... Hans Bezemer via GNU roff typesetting system discussion
    • Re: Slight al... Douglas McIlroy
      • Re: Sligh... Hans Bezemer via GNU roff typesetting system discussion

Reply via email to