> I am facing key length issues when generating new keys with GPGTools. I don't see any issue there. Two certificates may be of vastly different lengths for many different reasons. So far there's no reason to believe they contain different lengths of asymmetric keys.
A 4096-bit key takes up about 12 lines of text in a certificate. The rest is other, non-key-related stuff. Instead of posting a link to an image of two certificates, please share the two certificates themselves -- for instance, via Dropbox or Pastebin. Once we can see the actual certificates we'll be able to more fully explain what's going on.
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