On Mon, Nov 4, 2013 at 12:01 PM, bharat gupta <bharat.85.m...@gmail.com>wrote:
> Hi, > > I am trying to install gromacs 4.5.7 on rocks cluster(6.0) and it works > fine till .configure command, but I am getting error at the make command :- > > Error: > ==================== > [root@cluster gromacs-4.5.7]# make > These is no need to run make as root - doing so guarantees you have almost no knowledge of the final state of your entire machine. > /bin/sh ./config.status --recheck > running CONFIG_SHELL=/bin/sh /bin/sh ./configure --enable-mpi > LDFLAGS=-L/opt/rocks/lib CPPFLAGS=-I/opt/rocks/include --no-create > --no-recursion > checking build system type... x86_64-unknown-linux-gnu > checking host system type... x86_64-unknown-linux-gnu > ./configure: line 2050: syntax error near unexpected token `tar-ustar' > ./configure: line 2050: `AM_INIT_AUTOMAKE(tar-ustar)' > make: *** [config.status] Error 2 > Looks like the system has an archaic autotools setup. Probably you can comment out the line with tar-ustar from the original configure script, or remove tar-ustar. Or use the CMake build. > > > I have another query regarding the gromacs that comes with the Rocks > cluster distribution. The mdrun of that gromacs has been complied without > mpi option. How can I recomplie with mpi option. As I need the .configure > file which is not there in the installed gromacs folder of the rocks > cluster ... > The 4.5-era GROMACS installation instructions are up on the website. Whatever's distributed with Rocks is more-or-less irrelevant. Mark > > > Thanks in advance for help > > > > > Regards > ------------ > Bharat > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
