Hello,
I am trying to convert a protein+ATP+water+ion system pdb into gromacs
files. I need to use the existing water and ion coordinates. I can
convert the protein part using pdb2gmx and grompp fine. But, I do not know
how to process the solvent and ion coordinates separately and combine them
to make the final system. Can anyone give me direction? I am new to
gromacs...
Thanks you very much.
-Dina
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