Probably, make your broken molecules whole before passing them to grompp. Mark
On Tue, Oct 22, 2013 at 8:26 AM, Sathish Kumar <sathishk...@gmail.com>wrote: > The sum of the two largest charge group radii (13.336) is larger > than rlist(1.2) - rvdw/rcoulomb i am getting this error while running > membrane simulations. please any one suggest how to rectify this error. > -- > regards > M.SathishKumar > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
