Hi all, I recently performed MD simulation of protein - ligand complex..and analyzed its trajectory using RMSF tool in gromacs.
This analysis revealed particular residue in binding site of protein showed quite high fluctuation around 0.30 nm but other residues were in range of 0.15 to 0.20 Can any body explain why this particular residue have high RMSF value in compared to other residues Thanks, Nitin -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
