On 10/8/13 7:28 AM, Mass wrote:
I am trying to install "DSSP" in Ubuntu 12.10, I just download it from Ubuntu
software centre but when I run it I am getting the following error, any solution? I have
checked all the mail list archive and could not solve my problem
Fatal error:
Failed to execute command: /usr/local/bin/dssp -na ddZGP3ET ddjex0J9 > /dev/null
2> /dev/null
You probably need to set -ver appropriately in your do_dssp command.
I google it and found this on ubuntu forum but I followed it and still I am
getting error
up vote
0
down vote
accept DSSP is not in official ubuntu repositories, but you can install it
manually:
sudo wget ftp://ftp.cmbi.ru.nl/pub/software/dssp/dssp-2.0.4-linux-amd64 -O
/usr/local/bin/dssp
or
sudo wget ftp://ftp.cmbi.ru.nl/pub/software/dssp/dssp-2.0.4-linux-i386 -O
/usr/local/bin/dssp
And for the end:
sudo chmod a+x /usr/local/bin/dssp
I have done this but still I am getting Fatal error: DSSP executable
(/opt/dssp/bin/dssp) does not exist (use setenv DSSP) –
If you have set the $DSSP environment variable to point to /opt/dssp/bin/dssp,
then you should get a fatal error, because based on the above commands, your
dssp is in /usr/local/bin/dssp, which is the default location where do_dssp
looks for it. If $DSSP is set, it overrides the default, which in your case is
causing problems.
Also appreciate if any one can give simple and step-by step instruction to
insall dssp-2.2.1 from website. I mean after downloading dssp-2.2.1.tgz and
extracting it what should I do? –
Unzip the archive, compile from source if you are downloading source (ignore if
you are downloading a binary), move the binary wherever you want it, set $DSSP
only if you are not putting it in /usr/local/bin.
-Justin
--
==================================================
Justin A. Lemkul, Ph.D.
Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalem...@outerbanks.umaryland.edu | (410) 706-7441
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