i want to analyze the change of secondary structure of the mainchian frome 
residue 20 to residue 60. so i want to make a index file that only contain the 
maninchian+H from residue 20 to residue 60.  i have inputed the command " 
make_ndx -f em.pdb -o index.ndx", but i don't kown how to do next . what should 
i input ? thank you very much!
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