i want to analyze the change of secondary structure of the mainchian frome
residue 20 to residue 60. so i want to make a index file that only contain the
maninchian+H from residue 20 to residue 60. i have inputed the command "
make_ndx -f em.pdb -o index.ndx", but i don't kown how to do next . what should
i input ? thank you very much!
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