On Wed, Sep 11, 2013 at 3:08 PM, Mark Abraham <mark.j.abra...@gmail.com>wrote:
> No idea if it's causing your problem, but you need all the Ds in > -DBUILD_SHARED_LIBS=no > > Mark > > On Wed, Sep 11, 2013 at 6:15 AM, Qin Qiao <qiaoqi...@gmail.com> wrote: > > Dear all, > > > > I'm trying to install gromacs4.6.3 with mvapich2-1.9a on a local cluster > > and got the following error in step 'make': > > > > "/usr/bin/ld: > > /usr/local/mvapich2-1.9a-gcc/lib/libmpich.a(mvapich_malloc.o): relocation > > R_X86_64_32 against `.bss' can not be used when making a shared object; > > recompile with -fPIC > > /usr/local/mvapich2-1.9a-gcc/lib/libmpich.a: could not read symbols: Bad > > value > > " > > > > I was using command > > "cmake ../ -DGMX_MPI=ON -DCMAKE_INSTALL_PREFIX=/.../gromacs-4.6.3/ > > -DGMX_BUILD_OWN_FFTW=ON -BUILD_SHARED_LIBS='no' > Thanks, Mark! I get to know -D is a must for cmake to define variables. Best Qin > " > > and I thought the mvapich is compiled with --enable-shared... > > > > Could you give me some advice if possible? Thanks in advance. > > > > Best > > > > Qin > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
