Hi Justin, If you are willing to see my complex pdb file or complex .gro file and topology files, I'll send you for the reference.
Thanks Rama On Sat, Sep 7, 2013 at 5:42 PM, Justin Lemkul <jalem...@vt.edu> wrote: > > > On 9/7/13 6:40 PM, Rama Krishna Koppisetti wrote: > >> Hi Justin, >> >> I use similar procedure as you mentioned in the tutorial to generate my >> topologies for protein and bilayer. there is no .rtp file for lipid. Is >> there any reference to include lipid molecule in aminoacid.rtp file. >> >> > Read the manual and look at existing examples. The .rtp format is very > similar to the standard topology (.top/.itp) format, probably even a bit > more straightforward. > > > -Justin > > -- > ==============================**==================== > > Justin A. Lemkul, Ph.D. > Postdoctoral Fellow > > Department of Pharmaceutical Sciences > School of Pharmacy > Health Sciences Facility II, Room 601 > University of Maryland, Baltimore > 20 Penn St. > Baltimore, MD 21201 > > jalemkul@outerbanks.umaryland.**edu <jalem...@outerbanks.umaryland.edu> | > (410) > 706-7441 > > ==============================**==================== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > * Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > * Please don't post (un)subscribe requests to the list. Use the www > interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
