Thanks for the reply João, I am using gromacs 4.6.3, I did centre all 4 frames at the prosthetic group. I tried GMX_TPI_DUMP = 5.0e+3, 5.0e+20, and even 5.0e-03, still, not a single .pdb file written. I am doing this on a 4 frame trajectory, consisting of ~7000 atoms per frame. I think it may have to do with the frames that have infinite chemical potential with the insertion? It doesnt seem to have anything to do with TPI_DUMP, when I lower rtpi to 0.05 the .xvg file becomes less ridiculously large, only 0.5 gigs... I suppose I need to try an older version of gromacs, and see if my setup works there -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
Re: [gmx-users] TPIC and GMX_TPI_DUMP
Rafael I. Silverman y de la Vega Fri, 30 Aug 2013 16:57:00 -0700
- [gmx-users] TPIC and GMX_TPI_DUMP Rafael I. Silverman y de la Vega
- Re: [gmx-users] TPIC and GMX_TPI_DUM... João M . Damas
- Re: [gmx-users] TPIC and GMX_TPI... Rafael I. Silverman y de la Vega
- Re: [gmx-users] TPIC and GMX... João M . Damas
- Re: [gmx-users] TPIC and... Rafael I. Silverman y de la Vega
- Re: [gmx-users] TPI... João M . Damas
- Re: [gmx-users]... João M . Damas
- Re: [gmx-us... Rafael I. Silverman y de la Vega
- Re: [gmx-us... Rafael I. Silverman y de la Vega