Hi Tomas, I am sorry to come with this further problem of gromacs.
I would like to plot an interaction energy between DT without include DA. But I do not know how to ask make g_energy read my index file. Furthermore, I was interested of the distance between C5-C6 in adjacent DT. But I do not know how to ask make_ndx to read C5-C6 in DT with looking for the DA. Please If you can suggest me something it will be great for me. I wish you a wonderful day. Collins On Wed, Jul 31, 2013 at 4:20 PM, Collins Nganou <nganoucoll...@gmail.com>wrote: > > Dear all, > > I am looking how I can extract the interaction energy between specific > residue in a set of residues. > > example: > > I have DT and DA residues, I would like to plot only the energy of the DT. > I can extract the DT with the index file, But I am missing information on > how to plot the energy base on my index file where I can select only DT. > > I was only looking the way to extract the c5-c6 distance of adjacent DT > without include DA. > > I will be very grateful to receive any suggestions.... > > > > I wish you all a wonderful day... > > Collins > > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
