Hi all,
I'm trying to compile 4.6.3 on my desktop, but have running into some issues
with FFTW.
Specifically with "-DGMX_BUILD_OWN_FFTW=ON" make seems to crash with M4 (if I'm
reading it right)
This is not dpkg install-info anymore, but GNU install-info
See the man page for ginstall-info for command line arguments
Making install in tools
/usr/bin/install -c fftw-wisdom-to-conf
'/home/jacob/Desktop/gromacs-4.6.3/build-cmake/src/contrib/fftw/gmxfftw-prefix/bin'
/bin/bash ../libtool --mode=install /usr/bin/install -c fftwf-wisdom
'/home/jacob/Desktop/gromacs-4.6.3/build-cmake/src/contrib/fftw/gmxfftw-prefix/bin'
/usr/bin/install -c -m 644
/home/jacob/Desktop/gromacs-4.6.3/build-cmake/src/contrib/fftw/gmxfftw-prefix/src/gmxfftw/tools/fftw-wisdom-to-conf.1
fftwf-wisdom.1
'/home/jacob/Desktop/gromacs-4.6.3/build-cmake/src/contrib/fftw/gmxfftw-prefix/share/man/man1'
libtool: install: /usr/bin/install -c fftwf-wisdom
/home/jacob/Desktop/gromacs-4.6.3/build-cmake/src/contrib/fftw/gmxfftw-prefix/bin/fftwf-wisdom
Making install in m4
[ 57%] Completed 'gmxfftw'
[ 57%] Built target gmxfftw
make: *** [all] Error 2
I've already have an AVX-compiled installed for other uses, building GMX of of
that went fine aside from recommendations against using it in both the doc's
and the build itself (upto 20% speed reduction, rather not thanks)
Any suggestions, help or pointers, would be greatly appreciated.
the only thing I can think of is create a separate build of FFTW and then
direct cmake to use that one.
I was able to build a new FFTW (--enable-sse2), but couldn't figure out how to
get cmake to prefer it over the others.
I hope this is clear,
thanks
jacob
machine in question
Dell T3600 e5-1650 32gb ram (ECC) with nvidia quadro-600
Xubuntu 13.04 (ubuntu, xfce spin)
M4 ubuntu packaged 1.4.16-5
command variations attempted:
cmake ..-DGMX_GPU=OFF -DGMX_BUILD_OWN_FFTW=ON
-DCMAKE_INSTALL_PREFIX=/opt/gromacs4.6.3 2>&1|tee cmakeinitall.txt
cmake .. -DGMX_BUILD_OWN_FFTW=ON -DCMAKE_INSTALL_PREFIX=/opt/gromacs4.6.3
2>&1|tee cmakeinitall.txt
cmake .. -DGMX_GPU=ON -DCUDA_TOOLKIT_ROOT_DIR=/usr/include/cuda
-DGMX_BUILD_OWN_FFTW=ON -DCMAKE_INSTALL_PREFIX=/opt/gromacs4.6.3
cmake .. -DGMX_GPU=ON -DCUDA_TOOLKIT_ROOT_DIR=/usr/local/cuda
-DGMX_BUILD_OWN_FFTW=ON -DCMAKE_INSTALL_PREFIX=/opt/gromacs4.6.3
cmake .. -DGMX_GPU=ON -DCMAKE_INSTALL_PREFIX=/opt/gromacs4.6.3
-DGMX_BUILD_OWN_FFTW=ON 2>&1|tee cmakeInitall.txt
All die as above after:
make -j 12
BUT
cmake .. -DGMX_GPU=OFF -DCMAKE_INSTALL_PREFIX=/opt/gromacs4.6.3avx
make -j 12
sudo make install
Runs fine, a full copy of the terminal text for gpu=off fftw=on can be
found at:
https://www.dropbox.com/s/367aji2x42w3ogz/cmakeinitall.txt
https://www.dropbox.com/s/fmj5nszul3taczj/makej12.txt
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