sir, the reason for selecting POPE doesn't have much valid reason. I mean, I have referred previous works and in the recent work they have used POPE membrane for my protein (the exact protein) simulation. I have searched literature on selecting a membrane for simulation to know/understand why they have selected the particular membrane. But couldn't find put the reason why?. And, sorry I have misunderstood what you have mentioned about the protein out of the box. I get the point now. I have used editconf and have increased the Z dimension of the box. Now the protein fits inside the box and no protruding. Thank you sir.
-- View this message in context: http://gromacs.5086.x6.nabble.com/problem-in-g-membed-tp5009503p5010176.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
