Hello:
I am using the following configuration to compile gromacs-4.6.2 in a
GPU cluster:
CC=icc FC=ifort F77=ifort CXX=icpc
CMAKE_PREFIX_PATH=/export/intel/cmkl/include/fftw:/export/mpi/mvapich2-1.8-rhes6
cmake .. -DGMX_MPI=ON
-DCMAKE_INSTALL_PREFIX=/home/albert/install/gromacs -DGMX_GPU=ON
-DBUILD_SHARED_LIBS=OFF -DCUDA_TOOLKIT_ROOT_DIR=/export/cuda5.0/cuda
-DFFTWF_LIBRARY=/home/albert/install/fftw-3.3.3/lib/libfftw3f.so
It was finished without any errors, But when I type
make -j4
it stopped at 66%:
clared but never referenced
static const double* sy_const[] = {
/home/albert/install/source/gromacs-4.6.2/include/maths.h(189): remark
#177: function "gmx_numzero" was declared but never referenced
gmx_numzero(double a)
^
/home/albert/install/source/gromacs-4.6.2/include/maths.h(196): remark
#177: function "gmx_log2" was declared but never referenced
gmx_log2(real x)
^
/home/albert/install/source/gromacs-4.6.2/include/vec.h(849): remark
#177: function "calc_lll" was declared but never referenced
static void calc_lll(rvec box, rvec lll)
^
/home/albert/install/source/gromacs-4.6.2/include/vec.h(880): remark
#177: function "m_rveccopy" was declared but never referenced
static void m_rveccopy(int dim, rvec *a, rvec *b)
^
/home/albert/install/source/gromacs-4.6.2/include/vec.h(892): remark
#177: function "matrix_convert" was declared but never referenced
static void matrix_convert(matrix box, rvec vec, rvec angle)
^
/home/albert/install/source/gromacs-4.6.2/include/grompp.h(155): remark
#177: variable "ds" was declared but never referenced
static const char *ds[d_maxdir+1] = {
Linking CXX static library libmd_mpi.a
[ 66%] Built target md
make: *** [all] Error 2
thank you very much
Albert
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