On 6/27/13 5:59 AM, Sathish Kumar wrote:
Fatal error:
[ file spc.itp, line 32 ]
Atom index (1) in bonds out of bounds (1-0).
This probably means that you have inserted topology
section "settles" in a part belonging to a different
molecule than you intended to. in that case move the
"settles" section to the right molecule
the above error i am getting while running grommp command for membrane
simulation. I made up the correct topology file.Here i used tip3p
water model. But why this error coming i did not understood. Can you
please clarify and suggest how to overcome this error.
http://www.gromacs.org/Documentation/Errors#Atom_index_(1)_in_bonds_out_of_bounds
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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