There's number of analysis tools briefly described in chapter 8 of the manual, and lots more detail in Appendix D. Have a look at what is there, and do your background reading of the literature to see the kinds of things people have done before you.
Mark On Tue, Jun 25, 2013 at 1:18 PM, Shine A <shin...@iisertvm.ac.in> wrote: > Sir, > > I did an remd simulation in implicit solvent for a peptide.I want to > compare the NOE distances from NMR and various conformations from REMD > output. Here how I get various conformations from remd trajectory? .Is any > script is available to find distance between two particular atoms?.How I > get kinetics of folding from g_kinetics? > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
