>>>> or should i be doing < U+<V>*ref_p > = <H>? >> >>> More specifically, <U> + <V>*ref_p = H >> >>> <H> isn't really meaningful thing. I mean, you can define something >>> such that <H*> = H, but that's not really thermodynamics. >> >> sorry I always have issues deciding how to talk about this stuff, so >> thanks >> for putting up with my terrible notation =) >> >>>> example system gives <H> = -1168 kJ/mol and i find <H> = -725 kJ/mol >>>> either >> >>> Interesting. What material at what phase conditions? For liquids, >>> the PV contribution should be very small. >> >> I hadn't really thought about that... but the system is a monatomic >> Lennard-Jones particle (uncharged sigma = 0.35 nm epsilon = 2 kJ/mol mass >> = >> 40 amu) which should be a liquid at the conditions I was looking at, >> P=1000 >> bar, T = 300 K using phase diagram in: Equation of state for the >> Lennard-Jones fluid, J. J. Nicolas et al., MOLECULAR PHYSICS, 1979, VOL. >> 37, >> No. 5, 1429-1454 >> >> the <U> is -1600 and the p<V> is 880 when manually done, around 400 from >> g_energy >Here's the code: > /* This is pV (in kJ/mol). The pressure is the reference > pressure, > not the instantaneous pressure */ > pv = vol*md->ref_p/PRESFAC; > > add_ebin(md->ebin, md->ipv, 1, &pv, bSum); > enthalpy = pv + enerd->term[F_ETOT]; > >What is your volume? >What is Etot?
a bit messy but this is data from g_energy for the system with increasing temperature (300 K-1000 K), and constant pressure of 1000 bar (so 100 000 000 Pascals): Temperature Volume Enthalpy Potential Total Energy pV Kinetic En. K nm^3 kJ/mol kJ/mol kJ/mol kJ/mol kJ/mol 299.914 14.7226 -1168.83 -2565.44 -1611.63 442.791 953.817 399.901 17.462 -339.795 -2080.31 -808.501 468.706 1271.81 499.898 21.0263 421.763 -1666.7 -76.8794 498.643 1589.83 599.899 25.1149 1088.79 -1348.14 559.718 529.07 1907.86 699.914 29.4219 1668.2 -1115.47 1110.46 557.733 2225.94 799.925 33.764 2184.31 -943.613 1600.39 583.922 2544 899.923 38.0865 2660.3 -809.572 2052.45 607.847 2862.03 999.931 42.2798 3101.56 -707.908 2472.17 629.383 3180.08 all uncorrected for the number of particles in the box (so Etot is in kJ/256 mol of particles) when i use this data to get H myself i get: H kJ/mol -725.32948 242.7114 1188.90386 2071.63498 2881.65838 3632.9828 4345.2573 5017.41396 again uncorrected for the number of particles in the box Thoughts? -- View this message in context: http://gromacs.5086.x6.nabble.com/Enthalpy-Confusion-tp5009053p5009164.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists