Hi All, I already done the MD production so I want to analyse the helical structure of my protein by using do_dssp program.The command is like below :
do_dssp -s md_water50.tpr -f md_water50.trr -n mainchain.ndx -sc dssp_scount.xvg -a dssp_area.xvg -ta dssp_totarea.xvg -aa dssp_averarea.xvg but after i run the command the result show like : Reading file md_water50.tpr, VERSION 4.5.5 (double precision) Reading file md_water50.tpr, VERSION 4.5.5 (double precision) Segmentation fault (core dumped) I already install the dssp program from ftp://ftp.cmbi.ru.nl/pub/software/dssp/ and follow the instruction as shown there but it seems that nothing happened..I already gedit the .bashrc for dssp. -- Best Regards, Nur Syafiqah Abdul Ghani, Theoretical and Computational Chemistry Laboratory, Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, 43400 Serdang, Selangor. alternative email : syafiqahabdulgh...@gmail.com @ gs33...@mutiara.upm.edu.my -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
