Hello all, I am using pdb2gmx (4.5.5 version) to create an AMBER99sb-ILDN topology file for a peptide. It gives me only NH3+ as the N-terminus and COO- as the C-terminus. But, I want to have the C-terminus as COOH. The C-terminal residue is GLY.
Can anybody give me some idea how to get the GLY COOH C-terminus using this force-field? What could be the charges for the terminus? Thanks a lot, Santanu -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
