On 2013-05-28 14:39, massimo sandal wrote:
What other people do?
Read literature. Gromacs allows you to choose many. If you need detailed
results use an atomistic force field.
2013/5/28 Dr. Vitaly Chaban <vvcha...@gmail.com>
In my mind, MARTINI is a decent option to build your particular topology
upon.
Dr. Vitaly Chaban
On Tue, May 28, 2013 at 8:22 AM, Revthi Sanker <revthi.san...@yahoo.com
wrote:
Dear all,
I am a beginner to performing simulations and my system consists of
protein+ cholesteryl ester +phospholipid and drug. Papers involving
lipids
are in general united atom, while those involving drug-protein systems
are
all-atom mostly. Kindly suggest me which of these, all-atom or united
atom
should I be using for my system.
Thanks for your help in advance
Yours sincerely,
Revathi
M.S. Research Scholar
Indian Institute of Technology,Madras
India
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