On 5/20/13 9:30 AM, vidhya sankar wrote:
Dear Mark/justin Thank you for Previous reply


                                  My Final Production MD only shows Error Like 
Lincs , System Exploding  And segmentation Fault
TO Avoid this May I Further Extend My equilibration from 2 ns to 10 ns ?

Given that we don't know (1) if you built the system right, (2) constructed the topology correctly, (3) are using correct .mdp settings or (4) what you define as "equilibration" and how it differs from the failing run, there is absolutely no useful advice that anyone can give you beyond guesswork, which is a waste of time for everyone involved. If you provide a thorough description of precisely what you have done, someone may be able to help you.

-Justin

--
========================================

Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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