Google knows a lot more about that one than me ;-) Mark
On Mon, May 6, 2013 at 9:16 AM, Preeti Choudhary < preetichoudhary18111...@gmail.com> wrote: > hey thanks Mark.... > What do you mean by -the random seed is in a different variable.Can you > please explain "the random seed" > > > > On Fri, May 3, 2013 at 1:32 PM, Mark Abraham <mark.j.abra...@gmail.com > >wrote: > > > gen_vel controls the generation of random velocities. grompp follows it > > (but I'd have to check the code to see what it does if you use grompp > -t). > > tprconv does not follow it. > > > > The random seed is in a different variable, but only does anything if > > gen_vel=yes. > > > > I am not sure what the basis of your confusion about repeated calls to > > grompp is. > > > > Mark > > > > On Fri, May 3, 2013 at 8:00 AM, Preeti Choudhary < > > preetichoudhary18111...@gmail.com> wrote: > > > > > hey this is regarding random seed used in md.this is when it selects > the > > > intial velocity and selects from maxwell-istribution.but is it selects > > only > > > once or selects this random seed every time when grompp makes .tpr > > > file.really confused about this random seed concept.can u clear my > > > confusion?? > > > > > > -thanks > > > -- > > > gmx-users mailing list gmx-users@gromacs.org > > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > > * Please search the archive at > > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > > * Please don't post (un)subscribe requests to the list. Use the > > > www interface or send it to gmx-users-requ...@gromacs.org. > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
