Dear Justin thanks for your email. I have tried those you mentioned in your email.
I have submitted molecule of interest in PRODRG and got a DRG.itp or DRG.pdb file. I fired command pdb2gmx using DRG.pdb (obtained from PRODRG) using Gromos96 43a1 force field , but I received the follwoing fatel error: "Residue "DRG" not found in residue topology database". Let me know, how to handle this error ? please give me a brief step how to do this ? I hope you will give me a solution. Thanks in advance Thanks & Regards, HARESH AJANI -- View this message in context: http://gromacs.5086.x6.nabble.com/Only-Ligand-Without-Receptor-MD-Simulation-with-solvent-other-than-water-tp5007488p5007537.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
