Dear Justin, i really need you help and i will wait for your help ! i am a newer and there anyone can help me , i hope the frames extracted from a MD can align. i really don't know why this happen. thank you very much!
At 2013-04-21 21:47:36,aixintiankong <aixintiank...@126.com> wrote: Dear, could you tell me more detailed about to extract frames from a MD to align. i try the follow command,but it does not work, trjconv -s topol.tpr -f traj.xtc -skip 10 -pbc nojump -sep. could you tell me how to align all the frames with the first pdb file that was extracted from traj.xtc ? thank you for you help! >On 4/21/13 7:40 AM, aixintiankong wrote: >> Dear, >> i have extracted 1000 frames from MD.xtc file. i found the relative >> postion of them is very diffrent . so i want to align them and keep them . >> please help me > >Please read trjconv -h. > >-Justin > >-- >======================================== > >Justin A. Lemkul, Ph.D. >Research Scientist >Department of Biochemistry >Virginia Tech >Blacksburg, VA >jalemkul[at]vt.edu | (540) 231-9080 >http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > >======================================== -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
