Hi Justin:
thanks for reply.
I redirect it by command:
mpirun -np 2 mdrun_mpi -v -s md.tpr -c md.gro -x md.xtc -g md.log > md.info
However the information is still in my terminal screen instead of
md.info file. It generate a md.info file, but it it is empty.
I also try to use command:
mpirun -np 2 mdrun_mpi -v -s md.tpr -c md.gro -x md.xtc -g md.log & >
md.info
but it said:
Invalid null command.
thanks a lot
Albert
On 04/17/2013 05:33 PM, Justin Lemkul wrote:
On 4/17/13 11:30 AM, Albert wrote:
Hello:
I found that each time I submit gromacs job in GPU workstation, the
log file
always in my terminal screen, like:
imb F 1% step 13700, will finish Wed Apr 17 17:57:20 2013
imb F 1% step 13800, will finish Wed Apr 17 17:57:20 2013
imb F 0% step 13900, will finish Wed Apr 17 17:57:20 2013
imb F 0% step 14000, will finish Wed Apr 17 17:57:20 2013
imb F 1% step 14100, will finish Wed Apr 17 17:57:19 2013
imb F 0% step 14200, will finish Wed Apr 17 17:57:19 2013
imb F 0% step 14300, will finish Wed Apr 17 17:57:19 2013
imb F 0% step 14400, will finish Wed Apr 17 17:57:19 2013
I am using command:
mpirun -np 2 mdrun_mpi -v -s nvt.tpr -c nvt.gro -g nvt.log -x nvt.xtc
grompp_mpi -f npt1.mdp -c nvt.gro -p topol.top -o heavy.tpr -n
mpirun -np 2 mdrun_mpi -v -s heavy.tpr -c heavy.gro -x heavy.xtc -g
1000.log
I am just wondering how can we direct the log file correctly?
Meanwhile tho job
won't have any problem going to next step (I am running all the steps
in one
script).
You're only getting that output because you're enabling verbose mode
with -v. If you don't want that information, don't use -v. If you do
want it, but just want it written to a file, redirect it using
standard command line redirection (Google is your friend).
-Justin
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
* Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
