On 4/19/13 4:28 PM, Brad Van Oosten wrote:
Checking file md50.xtc
Reading frame       0 time    0.000
# Atoms  27392
Precision 0.001 (nm)
Last frame      50000 time 100000.000


Item        #frames Timestep (ps)
Step         50001    2
Time         50001    2
Lambda           0
Coords       50001    2
Velocities       0
Forces           0
Box          50001    2

Appears to be evenly spaced


So then, to clarify, what you're saying is trjconv skips frames when writing output? That was what I was trying to determine from your original post. What does gmxcheck tell you about the output trajectory?

-Justin

--
========================================

Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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