Justin, Thanks for your comment. Instead of .xtc, I just used .trr in which nstvout isn’t zero. I'm still encountering to empty file for temperature.
Rasoul On Mon, Apr 8, 2013 at 2:10 PM, Justin Lemkul <jalem...@vt.edu> wrote: > On Mon, Apr 8, 2013 at 9:08 AM, Rasoul Nasiri <nasiri1...@gmail.com> > wrote: > > > Bellow is my command which I used: > > > > g_clustsize_d -f traj.xtc -s topol.tpr -n n.ndx -nc nclust.xvg -mc > > maxclust > > .xvg -ac avclust.xvg -mcn maxclust.ndx -cut 0.516 -temp Tempe.xvg > > > > > Then it is exactly what I said. Temperatures require velocities. Velocities > are not stored in .xtc files and thus you can't extract any temperature > information in this way. > > -Justin > > -- > > ======================================== > > Justin A. Lemkul, Ph.D. > Research Scientist > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) > 231-9080http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
