Dear James: As always, check the primary literature. The Amber99SB ff was introduced with an 8A cutoff and PME: http://www.ncbi.nlm.nih.gov/pubmed/16981200
Other cutoffs are at your discretion. I am, for instance, using this ff with a 1.0 nm cutoff and PME because I am using it with the Stockholm Lipids. Chris. -- original message -- I'd like to perform MD simulation of the membrane protein parametrized in Amber99sb force field. Could you tell me what cut-off patterns should I use for such simulation ? James -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
