Thanks Justin and Kukol for the info. Kukol, Can you please upload the cholesterol parameters also in the site you provided, if you have??.
On Fri, Mar 1, 2013 at 2:02 PM, Kukol, Andreas <a.ku...@herts.ac.uk> wrote: > Hello Venkat, > > You can use Gromos96 53a6 lipid parameters for DPPC, DMPC, POPC and POPG > with the Gromos96 53a6 force field. > > They can be downloaded from here: > https://sites.google.com/site/bioherts/home/lipid-topologies > > Reference: > Kukol, A., 2009. Lipid models for united-atom molecular dynamics > simulations of proteins. J. Chem. Theor. Comput., 5(3), 615-626. > > Andreas > > > -----Original Message----- > > From: gmx-users-boun...@gromacs.org [mailto:gmx-users- > > boun...@gromacs.org] On Behalf Of Justin Lemkul > > Sent: 28 February 2013 13:51 > > To: Discussion list for GROMACS users > > Subject: Re: [gmx-users] Gromos43A1-S3 lipid parameters > > > > > > > > On 2/28/13 2:16 AM, Venkat Reddy wrote: > > > Dear all, > > > Can I use Gromos43A1-S3 lipid parameters provided in the GROMACS site > > > along with the GROMOS53a6 forcefield in the same manner as Justin has > > > explained in his KALP15 tutorial? > > > > > > > It's probably more sensible to use 43A1, since that's the basis for the > 43A1-S3 > > lipids. > > > > -Justin > > > > -- > > ======================================== > > > > Justin A. Lemkul, Ph.D. > > Research Scientist > > Department of Biochemistry > > Virginia Tech > > Blacksburg, VA > > jalemkul[at]vt.edu | (540) 231-9080 > > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > > > ======================================== > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the www > interface > > or send it to gmx-users-requ...@gromacs.org. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- With Best Wishes Venkat Reddy Chirasani PhD student Laboratory of Computational Biophysics Department of Biotechnology IIT Madras Chennai INDIA-600036 -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
