On 2/19/13 10:52 AM, 라지브간디 wrote:
I want to calculate the dihedral angel of side chain of Arginine. could you
tell how it can be done? how do i create ndx for Arg and look at the dihedral
angel in sinumation time point ?
g_angle will measure the dihedral. Refer to g_angle -h for available options.
The index file itself is trivial to create manually with a text editor.
-Justin
--
========================================
Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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