hi guys,
does anyone know about a way to simulate mono- or polynucleotides along
with a 3' or 5' bound monophosphate using an amber force field like
ffamber99sb?
i couldn't find any residue definition for a terminal phosphate group
such as " P3' " or " P5' " (exemplarily). do they indeed not exist or am
i just not able to search them?
thanks in advance & take care
vedat
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