On Wed, Feb 6, 2013 at 6:05 PM, jeela keel <jeel...@gmail.com> wrote:

> cmake .. -DGMX_BUILD_OWN_FFTW=ON
>

Because you already build fftw yourself you don't need GMX_BUILD_OWN_FFTW.
The option means that gromacs builds fftw for you. Instead simply specify
where you installed fftw with CMAKE_PREFIX_PATH

Roland
-- 
ORNL/UT Center for Molecular Biophysics cmb.ornl.gov
865-241-1537, ORNL PO BOX 2008 MS6309
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