Check this: http://manual.gromacs.org/online/editconf.html
 editconf -align


On Fri, Jan 25, 2013 at 1:12 PM, 申昊 <shen...@mail.bnu.edu.cn> wrote:

> Dear GMX users,
>
>    I have a question about aligning my molecules along specific coordinate
> axis ,such as Z-axis.
>    Does anyone know the codes?
>
>
>  Best regards,
>  Hao
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