Hi Leandro! Actually I need such model of simple 2D lattice for study of the hessian matrix. So I'd like to perform simulation of very simple system without any rotation freedoms and calculate eigenvectors from that trajectory by means of Esential dynamics analysis. Than I'd like to watch on what exactly principal components different motions would be observed. Finally I'd like to calculate normal modes from different MD snapshots and compare different sub-spaces with the EDA results. So any aproximate system for such task would be suitable (I've decided to use lattice because it's most simple that I've imagine ). By the way I supose that such topology coupld be eaasily done from topology of fullerene :) But I've lack it too.
James 2012/12/30 Leandro Bortot <leandro....@gmail.com>: > Leandro -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
