Dear users,

I have simulated a protein dimer using OPLS-AA in 4.5.3 version.
Analysing simulation showed that one of the monomer is out side
the box.
I tried trjconv pbc -nojump and trjconv -pbc mol
still some fraction of a time one of them goes out. Can anyone
suggest some solution to this.
I need to calculate the radius of gyration of dimer, this value differs
when i use treated and untreated trajectories.
So Kindly suggest some solution.

Thank you
kavya
-- 
gmx-users mailing list    gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
* Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
* Please don't post (un)subscribe requests to the list. Use the 
www interface or send it to gmx-users-requ...@gromacs.org.
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

Reply via email to