Hi Szilárd, I compiled with the Intel compilers, not gcc. In case I am missing something, these are the versions I have:
glibc.i686 2.15-57.fc17 @updates glibc.x86_64 2.15-57.fc17 @updates glibc-common.x86_64 2.15-57.fc17 @updates glibc-devel.i686 2.15-57.fc17 @updates glibc-devel.x86_64 2.15-57.fc17 @updates glibc-headers.x86_64 2.15-57.fc17 @updates gcc.x86_64 4.7.2-2.fc17 @updates gcc-c++.x86_64 4.7.2-2.fc17 @updates gcc-gfortran.x86_64 4.7.2-2.fc17 @updates libgcc.i686 4.7.2-2.fc17 @updates libgcc.x86_64 4.7.2-2.fc17 @updates Thomas On 19 November 2012 16:57, Szilárd Páll <szilard.p...@cbr.su.se> wrote: > Thomas & Albert, > > We are unable to reproduce the issue on FC 17 with glibc 2.15-58 and gcc > 4.7.2. > > Please try to update your packages (you should have updates available for > glibc), try recompiling with the latest 4.6 code and report back whether > you succeed. > > Cheers, > > -- > Szilárd > > > On Fri, Nov 16, 2012 at 4:31 PM, Szilárd Páll <szilard.p...@cbr.su.se > >wrote: > > > Hi Albert, > > > > Apologies for hijacking your thread. Do you happen to have Fedora 17 as > > well? > > > > -- > > Szilárd > > > > > > > > On Sun, Nov 4, 2012 at 10:55 AM, Albert <mailmd2...@gmail.com> wrote: > > > >> hello: > >> > >> I am running Gromacs 4.6 GPU on a workstation with two GTX 660 Ti (2 x > >> 1344 CUDA cores), and I got the following warnings: > >> > >> thank you very much. > >> > >> ---------------------------**messages----------------------** > >> ------------- > >> > >> WARNING: On node 0: oversubscribing the available 0 logical CPU cores > per > >> node with 2 MPI processes. > >> This will cause considerable performance loss! > >> > >> 2 GPUs detected on host boreas: > >> #0: NVIDIA GeForce GTX 660 Ti, compute cap.: 3.0, ECC: no, stat: > >> compatible > >> #1: NVIDIA GeForce GTX 660 Ti, compute cap.: 3.0, ECC: no, stat: > >> compatible > >> > >> 2 GPUs auto-selected to be used for this run: #0, #1 > >> > >> Using CUDA 8x8x8 non-bonded kernels > >> Making 1D domain decomposition 1 x 2 x 1 > >> > >> * WARNING * WARNING * WARNING * WARNING * WARNING * WARNING * > >> We have just committed the new CPU detection code in this branch, > >> and will commit new SSE/AVX kernels in a few days. However, this > >> means that currently only the NxN kernels are accelerated! > >> In the mean time, you might want to avoid production runs in 4.6. > >> > >> -- > >> gmx-users mailing list gmx-users@gromacs.org > >> http://lists.gromacs.org/**mailman/listinfo/gmx-users< > http://lists.gromacs.org/mailman/listinfo/gmx-users> > >> * Please search the archive at http://www.gromacs.org/** > >> Support/Mailing_Lists/Search< > http://www.gromacs.org/Support/Mailing_Lists/Search>before posting! > >> * Please don't post (un)subscribe requests to the list. Use the www > >> interface or send it to gmx-users-requ...@gromacs.org. > >> * Can't post? Read http://www.gromacs.org/**Support/Mailing_Lists< > http://www.gromacs.org/Support/Mailing_Lists> > >> > > > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- ====================================================================== Thomas Evangelidis PhD student University of Athens Faculty of Pharmacy Department of Pharmaceutical Chemistry Panepistimioupoli-Zografou 157 71 Athens GREECE email: tev...@pharm.uoa.gr teva...@gmail.com website: https://sites.google.com/site/thomasevangelidishomepage/ -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
