On Wed, Nov 7, 2012 at 11:48 PM, Dr. Vitaly Chaban <vvcha...@gmail.com> wrote: > On Wed, Nov 7, 2012 at 11:24 PM, Marcelo Depolo <marcelodep...@gmail.com> > wrote: >> I thought that at first, but other softwares run in parallel. If there's a >> problem, it' s somehow in the PBS. >> >> My guess is that my PBS don't allow the LAM library "see" others nodes. But >> I have no clue where the problem could be. > > I would be very surprised if this is true. The "nornal" sequences of > events during submission process is the following: > > 1) The system looks into your submission script and finds out the > resource requirements. > > 2) If the requirements are met, the job gets "R" status and the > remaining commands (which do not start with #PBS) are executed. > > 3) If there is a problem with the message parallel interface or the > [scientific] code, the job dies with some MPI-specific error message, > or with code-specific message, or usually both of them. > > What I see in your report, your "error" message comes from PBS, i.e. > neither MPI nor gromacs are launched. >
Are you stating that other programs on your cluster run successfully on multiple nodes using the same (the #PBS part) submission script and only gromacs-jobs complain about lack of resources? I cannot believe... -- Dr. Vitaly V. Chaban MEMPHYS - Center for Biomembrane Physics Department of Physics, Chemistry and Pharmacy University of Southern Denmark Campusvej 55, 5230 Odense M, Denmark -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
