On Sun, Nov 4, 2012 at 2:38 PM, Mehdi Bagherpour <mbagherpour7...@gmail.com>wrote:
> Dear all, > > I used Gromacs to Simulate DNA(15bp) with CHARMM27 force-field in 50ns > .My sistem has about 10000 water molecules and outside of the DNA and the > edge of the box is 1nm. At the end of simulation the DNA is destroyed. > I used 8 processor system for simulation. > My mdp files for NVT,NPT,MD and last snap-shot pdb file is attached. > > Now I am wandering if you could advise me a method to solve this problem. > > I would appreciate your help. > Looking forward to hearing from you. > > Cheers, > Bagherpour > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
