Dear justin Thank you for your previous reply, Finally I Have Found out problem When I Shrink My system Using Script The Size of the box at the end of System_inflated.gro file is not as i Have Assigned previously it has been Changed From Box size from 6 6 6 to 27 27 6.00 when I edit The end line of Output file Everything become Ok (when i Solvate it has been solvated with 1024 sol Molecules)
Now Can i use different DPPC Cut-off Value (20 or 25 ) ? or Different Scaling Factors (instead 0.95) Because When i Use 14 for my System No Lipid Molecules has been Deleted Also There is sudden Shrink in APL When I go from first iteration and EM to Second Shrink ( from 93A to 4.7A) Why Such Drastic Fall of APL Occurs? How to Rectify this Problem? Thanks in Advance -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
