Dear Justin Thank you for your Previous reply, But When I use Vandewalls Radii for Carbon Atom 0.375 As Quoted in your tutorial Then My Protein-Lipid System is solvated with 22000 Water Molecules Most of them are Within Bilayer . This is Huge number I Think
From your reply Mail I came to Conclusion that I need to Pack Lipid effectively Around Protein using inflategro .pl script (By doing More number of iterations Than I did Before ) Thereby I can Eliminate Presence of Void In my system Is My Above Understanding is correct or Not ? Also When I do the more Iteration using inflategro.pl script My area per lipid Is very less than Experimental value for DPPC lipid (62 A) Then Can i continue My solvation with this Low area ( I am using Box size of 6 6 6 ) Thanks In Advance -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
