Hi, I converted a .tpr file to .pdb using editconf. editconf -f md.tpr -o new-md.pdb I visualised new-topol.pdb using pymol. It has the virtual sites. Furthermore, the molecule(s) does not stay in the centre of the box. I need a proper .tpr or .pdb file for analysis. How can these problems fixed?
Thanks in advance -- Ahmet Yıldırım -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
