Hi all I am using g_hbond to calculate the number of hydrogen bonds in an alcohol system. I am using the following command:
g_hbond -f traj.trr -nonitacc I am slightly confused about the cut off r. Using the above command, is the default cut-off r (0.35nm) for the donor-acceptor distance or the hydrogen-acceptor ? Cheers Gavin -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
