On 5/10/2012 12:06 AM, mohammad agha wrote:
Dear GROMACS Users,
I asked this question before but I don't understand it!
I placed several materials in my box of simulation for example box with
6nm*6nm*6nm and my materials are not placed in the smaller box but when I
equilibrate my system, the box became smaller and temperature and pressure also
equilibrate. my question is: is my system and equilibrate mistake, because of
reach to smaller box? Is there equilibriums with reach to smaller box?
At least one of your volume, contents or model physics are not
consistent with the others, but only you can say which.
Mark
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